miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 28052 0.66 0.665791
Target:  5'- cUGCCgGCCGCGGaaGGaGCCcccgggcgcggcggaGACGGCg -3'
miRNA:   3'- uGCGGaUGGCGCCgcCC-CGG---------------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 80818 0.66 0.624513
Target:  5'- cGCGCCUcggcguCgGCGGaGGGGCCccguaGGCGAg -3'
miRNA:   3'- -UGCGGAu-----GgCGCCgCCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 18896 0.66 0.661112
Target:  5'- cACGCCgUACUGCgcggccacgcaGGCGcgacacaGGGCCcgGACGACc -3'
miRNA:   3'- -UGCGG-AUGGCG-----------CCGC-------CCCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 126388 0.66 0.671398
Target:  5'- aACGCgCUGCC-CGGCGaGcGGUCcGCGGCc -3'
miRNA:   3'- -UGCG-GAUGGcGCCGC-C-CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 118488 0.66 0.633905
Target:  5'- gGCGCCgagcUGCCGgGGCGGGa-CGGCuACg -3'
miRNA:   3'- -UGCGG----AUGGCgCCGCCCcgGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 135333 0.66 0.624513
Target:  5'- gGCGUCaGCCGCGcCGGggugcugcuGGCCGuCGACc -3'
miRNA:   3'- -UGCGGaUGGCGCcGCC---------CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 8919 0.66 0.633905
Target:  5'- -gGCCagggcgGCCuCGGCcGGGUCGGCGAUg -3'
miRNA:   3'- ugCGGa-----UGGcGCCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 122389 0.66 0.652679
Target:  5'- -aGCCgcagagACCGCuGC-GGGCCGgucGCGGCg -3'
miRNA:   3'- ugCGGa-----UGGCGcCGcCCCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 214315 0.66 0.643296
Target:  5'- -gGCgUGCCGCacgaGCa-GGCCGACGACu -3'
miRNA:   3'- ugCGgAUGGCGc---CGccCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94219 0.66 0.670464
Target:  5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 191066 0.66 0.651741
Target:  5'- cGCGCCUGgCGCuGGCugugcggcaagugGGGGUgGAUGGu -3'
miRNA:   3'- -UGCGGAUgGCG-CCG-------------CCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 221250 0.66 0.652679
Target:  5'- -gGCCgGCCGCGGCGGaaGUCgGGgGACg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCc-CGG-CUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 99312 0.66 0.643296
Target:  5'- cCGCCcGCuCGCGGCGGccuaCGACGAa -3'
miRNA:   3'- uGCGGaUG-GCGCCGCCccg-GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 151334 0.66 0.671398
Target:  5'- cCGCCc-UCGCGGCccGGCCGGCGcCa -3'
miRNA:   3'- uGCGGauGGCGCCGccCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 204652 0.66 0.671398
Target:  5'- gACGgCgACgCGCGGgGGaucGCCGGCGGCu -3'
miRNA:   3'- -UGCgGaUG-GCGCCgCCc--CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 103584 0.66 0.662048
Target:  5'- gACGCCUcgcagGCCacgagGGCGGuGUCGACGGCc -3'
miRNA:   3'- -UGCGGA-----UGGcg---CCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 141605 0.66 0.671398
Target:  5'- gACGCUgcagACCGUGGCGgucgauuucGGGgaGACGAa -3'
miRNA:   3'- -UGCGGa---UGGCGCCGC---------CCCggCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 161601 0.66 0.652679
Target:  5'- aACGaCCUGCagaaaGCGGUGuGGGCCcACGuCc -3'
miRNA:   3'- -UGC-GGAUGg----CGCCGC-CCCGGcUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 36981 0.66 0.633905
Target:  5'- gGCGgCUcuggACCGCcGCGGaGCgCGACGGCg -3'
miRNA:   3'- -UGCgGA----UGGCGcCGCCcCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 22732 0.66 0.624513
Target:  5'- -aG-CUACCGCgGGCGGcuGCUGACGAUc -3'
miRNA:   3'- ugCgGAUGGCG-CCGCCc-CGGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.