miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 17433 0.69 0.461319
Target:  5'- gAUGCCcuccUCGCGGCGGucgcGGCCGGcCGGCc -3'
miRNA:   3'- -UGCGGau--GGCGCCGCC----CCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 17873 0.7 0.415042
Target:  5'- cGCGCaggGCCcgggggacgugauagGCGGCGGcGGCCccgagGACGACg -3'
miRNA:   3'- -UGCGga-UGG---------------CGCCGCC-CCGG-----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 18087 0.66 0.662048
Target:  5'- gUGC--GCCGCGGCGGgacGGCCcccGCGGCc -3'
miRNA:   3'- uGCGgaUGGCGCCGCC---CCGGc--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 18141 0.7 0.411846
Target:  5'- aGCGCCcggGCCGCGucGCGGGccagGCCGA-GGCa -3'
miRNA:   3'- -UGCGGa--UGGCGC--CGCCC----CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 18896 0.66 0.661112
Target:  5'- cACGCCgUACUGCgcggccacgcaGGCGcgacacaGGGCCcgGACGACc -3'
miRNA:   3'- -UGCGG-AUGGCG-----------CCGC-------CCCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 19355 0.68 0.550028
Target:  5'- gAUGCCggACCGUcG-GGGGCuCGGCGGCc -3'
miRNA:   3'- -UGCGGa-UGGCGcCgCCCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 21911 0.67 0.568465
Target:  5'- cACGUCUcgucGCCGCuaCGGaGGgCGACGACg -3'
miRNA:   3'- -UGCGGA----UGGCGccGCC-CCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 22524 0.68 0.53178
Target:  5'- gACGCCgaaCGCGucggugucgauCGGGGCCGGgGACu -3'
miRNA:   3'- -UGCGGaugGCGCc----------GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 22732 0.66 0.624513
Target:  5'- -aG-CUACCGCgGGCGGcuGCUGACGAUc -3'
miRNA:   3'- ugCgGAUGGCG-CCGCCc-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 22969 0.72 0.33022
Target:  5'- -aGCCguucaucacCCGCGGCGGGacGCgGGCGGCg -3'
miRNA:   3'- ugCGGau-------GGCGCCGCCC--CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 23329 0.67 0.587053
Target:  5'- gGCGCCccggGCCGcCGGCGGuGuaCGaguGCGGCg -3'
miRNA:   3'- -UGCGGa---UGGC-GCCGCC-CcgGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 23993 0.66 0.671398
Target:  5'- -gGUC--CCGCGaGCGGGGaCCcGCGACg -3'
miRNA:   3'- ugCGGauGGCGC-CGCCCC-GGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 24218 0.67 0.59639
Target:  5'- gACGCCggaGCUGUccgaGGCgucGGGcccGCCGACGGCg -3'
miRNA:   3'- -UGCGGa--UGGCG----CCG---CCC---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 24915 0.67 0.614188
Target:  5'- cCGUCgcCCGCGGCGucGGGCuCGgcccgcaGCGACg -3'
miRNA:   3'- uGCGGauGGCGCCGC--CCCG-GC-------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 25200 0.7 0.436179
Target:  5'- cGCGUCcGCCGCGacggaGCGGGagcgagccGCCGGCGAUc -3'
miRNA:   3'- -UGCGGaUGGCGC-----CGCCC--------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 26928 0.68 0.558304
Target:  5'- gGCGCCUgaaacugaccucuACCgGCGGCGGaGCCaGACccuGACg -3'
miRNA:   3'- -UGCGGA-------------UGG-CGCCGCCcCGG-CUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 27748 0.78 0.144303
Target:  5'- cCGCC--CCGCGGCGGcGGCCGAgacCGGCg -3'
miRNA:   3'- uGCGGauGGCGCCGCC-CCGGCU---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 28052 0.66 0.665791
Target:  5'- cUGCCgGCCGCGGaaGGaGCCcccgggcgcggcggaGACGGCg -3'
miRNA:   3'- uGCGGaUGGCGCCgcCC-CGG---------------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 28221 0.76 0.194769
Target:  5'- uCGCCgaagaaggaACCGCGGcCGGGGCCGucgcgccgcgaguACGACg -3'
miRNA:   3'- uGCGGa--------UGGCGCC-GCCCCGGC-------------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 28269 0.7 0.403924
Target:  5'- gGCGCCUACCGCu-CGGcGCUGGCGGa -3'
miRNA:   3'- -UGCGGAUGGCGccGCCcCGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.