miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 45511 0.79 0.113722
Target:  5'- cACGCCgaaagcgcCCGCGGCGGGcGgCGGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCC-CgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 118781 0.8 0.098394
Target:  5'- gGCGCCUccGCCGCcgGGCGGGaGCUGugGGCc -3'
miRNA:   3'- -UGCGGA--UGGCG--CCGCCC-CGGCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 71579 0.81 0.091482
Target:  5'- cGCGCCggacgACCGCGGCcuugGGGGCCGGC-ACg -3'
miRNA:   3'- -UGCGGa----UGGCGCCG----CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 81353 0.81 0.085032
Target:  5'- gGCGCCUcccUCGCGGcCGGGGCgGGCGGCg -3'
miRNA:   3'- -UGCGGAu--GGCGCC-GCCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 142018 0.82 0.069887
Target:  5'- cCGUCUcuuCCGCGGCcgGGGGCCGGCGACc -3'
miRNA:   3'- uGCGGAu--GGCGCCG--CCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 83795 0.76 0.195215
Target:  5'- cCGCCgaggACCGCGuCGGGcgcGCCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGCGCcGCCC---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 67961 0.75 0.21379
Target:  5'- cGCGCCgguucGCCGUGGCGuccgccggaggaGGGCCGGCG-Cg -3'
miRNA:   3'- -UGCGGa----UGGCGCCGC------------CCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 102152 0.73 0.266916
Target:  5'- -gGCCgcgACCGCGGCuGGGUCGuCGAUc -3'
miRNA:   3'- ugCGGa--UGGCGCCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128188 0.74 0.261155
Target:  5'- uCGCCgagcggGCCGcCGGCGGGaCCGGgGACg -3'
miRNA:   3'- uGCGGa-----UGGC-GCCGCCCcGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 96304 0.74 0.261155
Target:  5'- cCGCC-GCCGCgGGCGGGccggucGCCGcACGACa -3'
miRNA:   3'- uGCGGaUGGCG-CCGCCC------CGGC-UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 97162 0.74 0.249939
Target:  5'- uGCGCCUGCgGCaGC-GGGCCGAgGAUc -3'
miRNA:   3'- -UGCGGAUGgCGcCGcCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 109936 0.74 0.244481
Target:  5'- aGCGCCacgaaguccACCGCGuGCGGGGgCGACGcCg -3'
miRNA:   3'- -UGCGGa--------UGGCGC-CGCCCCgGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 100051 0.74 0.244481
Target:  5'- gGCGCUgagACgcggggGCGGCGGcGCCGACGACg -3'
miRNA:   3'- -UGCGGa--UGg-----CGCCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 75560 0.74 0.244481
Target:  5'- -gGCUcGCCGgGGCGGGGCCGcCGcCg -3'
miRNA:   3'- ugCGGaUGGCgCCGCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 100134 0.74 0.244481
Target:  5'- cCGUCguggACgGCGGCGGaccGGUCGACGACa -3'
miRNA:   3'- uGCGGa---UGgCGCCGCC---CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 3069 0.74 0.244481
Target:  5'- gACGCg-GCgGCGGCGGcGGCCacGGCGGCg -3'
miRNA:   3'- -UGCGgaUGgCGCCGCC-CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 116963 0.74 0.232304
Target:  5'- cGCGCCaccggGCCGCcgacgccccguccgGGC-GGGCCGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCG--------------CCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128668 0.74 0.228701
Target:  5'- gGCGCCggaACCcgGCGGaCGGGGCCGucgugauCGGCa -3'
miRNA:   3'- -UGCGGa--UGG--CGCC-GCCCCGGCu------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 29732 0.75 0.218666
Target:  5'- uCGcCCUACCGUGGCggcgcgcgagGGGGCCcGGCGAUc -3'
miRNA:   3'- uGC-GGAUGGCGCCG----------CCCCGG-CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 121763 0.75 0.218174
Target:  5'- cGCGCCUcucgggaccgcggACCGCcgaGGCGGGGacgccgaagaCGACGACg -3'
miRNA:   3'- -UGCGGA-------------UGGCG---CCGCCCCg---------GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.