miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 116963 0.74 0.232304
Target:  5'- cGCGCCaccggGCCGCcgacgccccguccgGGC-GGGCCGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCG--------------CCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 115868 0.91 0.017633
Target:  5'- cGCGCCcggUGCCGCuGCGGGGCCGACGGCg -3'
miRNA:   3'- -UGCGG---AUGGCGcCGCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 81353 0.81 0.085032
Target:  5'- gGCGCCUcccUCGCGGcCGGGGCgGGCGGCg -3'
miRNA:   3'- -UGCGGAu--GGCGCC-GCCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 71579 0.81 0.091482
Target:  5'- cGCGCCggacgACCGCGGCcuugGGGGCCGGC-ACg -3'
miRNA:   3'- -UGCGGa----UGGCGCCG----CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 118781 0.8 0.098394
Target:  5'- gGCGCCUccGCCGCcgGGCGGGaGCUGugGGCc -3'
miRNA:   3'- -UGCGGA--UGGCG--CCGCCC-CGGCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 45511 0.79 0.113722
Target:  5'- cACGCCgaaagcgcCCGCGGCGGGcGgCGGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCC-CgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 134652 0.79 0.116484
Target:  5'- aACGCCgugGCCGaGuGCGGGGCCGACG-Cg -3'
miRNA:   3'- -UGCGGa--UGGCgC-CGCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 116732 0.79 0.125152
Target:  5'- cCGCCcgGCCGCGGCGaGGCCGGCGcCc -3'
miRNA:   3'- uGCGGa-UGGCGCCGCcCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 27748 0.78 0.144303
Target:  5'- cCGCC--CCGCGGCGGcGGCCGAgacCGGCg -3'
miRNA:   3'- uGCGGauGGCGCCGCC-CCGGCU---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 97356 0.77 0.149493
Target:  5'- gGCGCCgcccgcggagcggggACCGCGGCGgccggagacgggggcGGGCgCGACGACg -3'
miRNA:   3'- -UGCGGa--------------UGGCGCCGC---------------CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 6325 0.77 0.166096
Target:  5'- cCGCCgcCCGCGgggggaccgggcGCGGGGCCGGCGGg -3'
miRNA:   3'- uGCGGauGGCGC------------CGCCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 102308 0.76 0.178066
Target:  5'- gACGCCUACaucgccgaGCGGCuGGGCCGgcuccgguACGACa -3'
miRNA:   3'- -UGCGGAUGg-------CGCCGcCCCGGC--------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 45430 0.76 0.186896
Target:  5'- gGCGCCgGCCGCGGCGacucccuguccgacGCCGGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCGCCGCcc------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 28221 0.76 0.194769
Target:  5'- uCGCCgaagaaggaACCGCGGcCGGGGCCGucgcgccgcgaguACGACg -3'
miRNA:   3'- uGCGGa--------UGGCGCC-GCCCCGGC-------------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 83795 0.76 0.195215
Target:  5'- cCGCCgaggACCGCGuCGGGcgcGCCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGCGCcGCCC---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 67961 0.75 0.21379
Target:  5'- cGCGCCgguucGCCGUGGCGuccgccggaggaGGGCCGGCG-Cg -3'
miRNA:   3'- -UGCGGa----UGGCGCCGC------------CCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 121763 0.75 0.218174
Target:  5'- cGCGCCUcucgggaccgcggACCGCcgaGGCGGGGacgccgaagaCGACGACg -3'
miRNA:   3'- -UGCGGA-------------UGGCG---CCGCCCCg---------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 29732 0.75 0.218666
Target:  5'- uCGcCCUACCGUGGCggcgcgcgagGGGGCCcGGCGAUc -3'
miRNA:   3'- uGC-GGAUGGCGCCG----------CCCCGG-CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128668 0.74 0.228701
Target:  5'- gGCGCCggaACCcgGCGGaCGGGGCCGucgugauCGGCa -3'
miRNA:   3'- -UGCGGa--UGG--CGCC-GCCCCGGCu------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 3069 0.74 0.244481
Target:  5'- gACGCg-GCgGCGGCGGcGGCCacGGCGGCg -3'
miRNA:   3'- -UGCGgaUGgCGCCGCC-CCGG--CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.