miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 202132 0.66 0.633905
Target:  5'- gGCGCCggucucgGCCGCcgccGCGGGGCgGGUGGu -3'
miRNA:   3'- -UGCGGa------UGGCGc---CGCCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 148076 0.66 0.643296
Target:  5'- cGCGCCgcggucguCCGUcccccGGCGGcGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCG-----CCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 103584 0.66 0.662048
Target:  5'- gACGCCUcgcagGCCacgagGGCGGuGUCGACGGCc -3'
miRNA:   3'- -UGCGGA-----UGGcg---CCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 204652 0.66 0.671398
Target:  5'- gACGgCgACgCGCGGgGGaucGCCGGCGGCu -3'
miRNA:   3'- -UGCgGaUG-GCGCCgCCc--CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 225792 0.66 0.624513
Target:  5'- uGCGCCggccggGCCGCgGGCGGccggguGGCCuGgGACc -3'
miRNA:   3'- -UGCGGa-----UGGCG-CCGCC------CCGGcUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 174404 0.66 0.633905
Target:  5'- gGCGCgUucCCGCGGCgccGGGGCCucCGuCg -3'
miRNA:   3'- -UGCGgAu-GGCGCCG---CCCCGGcuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 191066 0.66 0.651741
Target:  5'- cGCGCCUGgCGCuGGCugugcggcaagugGGGGUgGAUGGu -3'
miRNA:   3'- -UGCGGAUgGCG-CCG-------------CCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 146092 0.66 0.671398
Target:  5'- cGCGCCcgaCGCGGUccucGGcGGCggCGGCGGCg -3'
miRNA:   3'- -UGCGGaugGCGCCG----CC-CCG--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 193375 0.66 0.633905
Target:  5'- uCGUC-GCCGCgGGCGGGGaCGACa-- -3'
miRNA:   3'- uGCGGaUGGCG-CCGCCCCgGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 151334 0.66 0.671398
Target:  5'- cCGCCc-UCGCGGCccGGCCGGCGcCa -3'
miRNA:   3'- uGCGGauGGCGCCGccCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 99312 0.66 0.643296
Target:  5'- cCGCCcGCuCGCGGCGGccuaCGACGAa -3'
miRNA:   3'- uGCGGaUG-GCGCCGCCccg-GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 77086 0.66 0.633905
Target:  5'- cCGCCgucGCCGCGGaccuccgagaCGGaGGCCcGGCGGu -3'
miRNA:   3'- uGCGGa--UGGCGCC----------GCC-CCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 221250 0.66 0.652679
Target:  5'- -gGCCgGCCGCGGCGGaaGUCgGGgGACg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCc-CGG-CUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 147607 0.66 0.661112
Target:  5'- uCGCCUcgacccgACCcuCGaCGGGGgCGACGACg -3'
miRNA:   3'- uGCGGA-------UGGc-GCcGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 213637 0.66 0.662048
Target:  5'- -gGCC-GCCGCgGGCGacGGCgaCGACGACg -3'
miRNA:   3'- ugCGGaUGGCG-CCGCc-CCG--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 217581 0.66 0.671398
Target:  5'- -aGCCgguCCgGCGGCgccgccucgGGGGUCGuCGGCg -3'
miRNA:   3'- ugCGGau-GG-CGCCG---------CCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 153364 0.67 0.615126
Target:  5'- cCGCUggGCUG-GGCGGcGGCUGGCGGu -3'
miRNA:   3'- uGCGGa-UGGCgCCGCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 95107 0.66 0.624513
Target:  5'- -aGCUcGgCGaCGGCGGGcccGCCGACGAa -3'
miRNA:   3'- ugCGGaUgGC-GCCGCCC---CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 154311 0.66 0.632966
Target:  5'- cACGUCgACCGCgacGGCGGcGGCCccgccccGGCGAg -3'
miRNA:   3'- -UGCGGaUGGCG---CCGCC-CCGG-------CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 157166 0.66 0.633905
Target:  5'- -gGCCggGCgGCgugGGCGGcGGCgCGACGAUc -3'
miRNA:   3'- ugCGGa-UGgCG---CCGCC-CCG-GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.