miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 128987 0.65 0.679789
Target:  5'- cCGCCUGCUGCGuuucuucaacgcGCacuGGGGCCGGgaggaguucgaacCGGCc -3'
miRNA:   3'- uGCGGAUGGCGC------------CG---CCCCGGCU-------------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 129845 0.66 0.632966
Target:  5'- cGCGUCUcagcGCC-CGGCGGaggagccccuugaGGCCGcacGCGACg -3'
miRNA:   3'- -UGCGGA----UGGcGCCGCC-------------CCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 132446 0.66 0.633905
Target:  5'- uGCGCUccCCgGCGGCGGGuCCGGgGAg -3'
miRNA:   3'- -UGCGGauGG-CGCCGCCCcGGCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 214315 0.66 0.643296
Target:  5'- -gGCgUGCCGCacgaGCa-GGCCGACGACu -3'
miRNA:   3'- ugCGgAUGGCGc---CGccCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 199321 0.66 0.652679
Target:  5'- cGCGCUUACCGUuguaGuaGuGGGCCGcgcccACGGCg -3'
miRNA:   3'- -UGCGGAUGGCG----CcgC-CCCGGC-----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 224679 0.67 0.61888
Target:  5'- cCGCCgucggcuggcCCGCGGUccugcccgcccugcuGGGGCCGGCcGCc -3'
miRNA:   3'- uGCGGau--------GGCGCCG---------------CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 117100 0.66 0.632966
Target:  5'- cCGCCcuggACCcggcacaGCGGCacGGGGCCccgucGGCGGCg -3'
miRNA:   3'- uGCGGa---UGG-------CGCCG--CCCCGG-----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95554 0.66 0.662048
Target:  5'- -aGCUcgGCCGCGGCGaGuccgucggcgccGGCCccGGCGACg -3'
miRNA:   3'- ugCGGa-UGGCGCCGC-C------------CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 226293 0.66 0.633905
Target:  5'- uGCGCCUGuccccgagacccCCGgGGCcuguGGGCCGugG-Cu -3'
miRNA:   3'- -UGCGGAU------------GGCgCCGc---CCCGGCugCuG- -5'
8949 3' -64.4 NC_002512.2 + 202132 0.66 0.633905
Target:  5'- gGCGCCggucucgGCCGCcgccGCGGGGCgGGUGGu -3'
miRNA:   3'- -UGCGGa------UGGCGc---CGCCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 212376 0.66 0.667661
Target:  5'- uACGCCgacGCCGacgucgagaucgaGGaGGcGGCCGACGAg -3'
miRNA:   3'- -UGCGGa--UGGCg------------CCgCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 94219 0.66 0.670464
Target:  5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 186423 0.67 0.615126
Target:  5'- cACGCCgUGCuCGgcCGGCuGGGCCuccuguacaccGACGACg -3'
miRNA:   3'- -UGCGG-AUG-GC--GCCGcCCCGG-----------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 159014 0.67 0.615126
Target:  5'- gGCGUCcgcGCCG-GGCGGa-CCGACGACu -3'
miRNA:   3'- -UGCGGa--UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 157166 0.66 0.633905
Target:  5'- -gGCCggGCgGCgugGGCGGcGGCgCGACGAUc -3'
miRNA:   3'- ugCGGa-UGgCG---CCGCC-CCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 161601 0.66 0.652679
Target:  5'- aACGaCCUGCagaaaGCGGUGuGGGCCcACGuCc -3'
miRNA:   3'- -UGC-GGAUGg----CGCCGC-CCCGGcUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 122389 0.66 0.652679
Target:  5'- -aGCCgcagagACCGCuGC-GGGCCGgucGCGGCg -3'
miRNA:   3'- ugCGGa-----UGGCGcCGcCCCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 217581 0.66 0.671398
Target:  5'- -aGCCgguCCgGCGGCgccgccucgGGGGUCGuCGGCg -3'
miRNA:   3'- ugCGGau-GG-CGCCG---------CCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 192894 0.66 0.643296
Target:  5'- aGCGCCgucgcgcuCCGCGGCGGuccagaGCCGccucCGAUg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCc-----CGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 222434 0.66 0.633905
Target:  5'- cCGC--GCCGCGGCuucccccGGGCCG-CGGCc -3'
miRNA:   3'- uGCGgaUGGCGCCGc------CCCGGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.