Results 21 - 40 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 7359 | 0.71 | 0.373219 |
Target: 5'- -gGCCcACCGCGaCGGcGGCCG-CGGCg -3' miRNA: 3'- ugCGGaUGGCGCcGCC-CCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 7453 | 0.67 | 0.60575 |
Target: 5'- -gGCCcgggggaaGCCGCGGCGcGGCUGcCGGCc -3' miRNA: 3'- ugCGGa-------UGGCGCCGCcCCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 7705 | 0.69 | 0.461319 |
Target: 5'- gACGCCgGCCGCGGCccGGGaGuaGGCGuCg -3' miRNA: 3'- -UGCGGaUGGCGCCG--CCC-CggCUGCuG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 8449 | 0.71 | 0.388372 |
Target: 5'- cGCGCCccgGCCGCGGUccgcauGGcGGCCGuCgGACa -3' miRNA: 3'- -UGCGGa--UGGCGCCG------CC-CCGGCuG-CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 8624 | 0.66 | 0.637662 |
Target: 5'- cGCGCCccgcgucccccgacuUccGCCGCGGCc-GGCCGAuCGACc -3' miRNA: 3'- -UGCGG---------------A--UGGCGCCGccCCGGCU-GCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 8919 | 0.66 | 0.633905 |
Target: 5'- -gGCCagggcgGCCuCGGCcGGGUCGGCGAUg -3' miRNA: 3'- ugCGGa-----UGGcGCCGcCCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 9487 | 0.67 | 0.615126 |
Target: 5'- -gGCCcGCgaGCGGCGGGuagaCGACGGCc -3' miRNA: 3'- ugCGGaUGg-CGCCGCCCcg--GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 9516 | 0.68 | 0.559226 |
Target: 5'- -gGCCccagcACgGCGGCGGcGGCC-ACGGCc -3' miRNA: 3'- ugCGGa----UGgCGCCGCC-CCGGcUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 10569 | 0.67 | 0.568465 |
Target: 5'- cACGCCgacgcucuccccgugGCCGCGGaCGacgaagcGGGCC-ACGGCg -3' miRNA: 3'- -UGCGGa--------------UGGCGCC-GC-------CCCGGcUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 10675 | 0.65 | 0.677927 |
Target: 5'- uCGCCgagGCCggcccggcaguGCaGCGGGuacaggaagcgguaGCCGACGGCg -3' miRNA: 3'- uGCGGa--UGG-----------CGcCGCCC--------------CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 10843 | 0.69 | 0.495985 |
Target: 5'- -aGCC--CCGCGcCGcGGCCGACGACg -3' miRNA: 3'- ugCGGauGGCGCcGCcCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 11446 | 0.67 | 0.584256 |
Target: 5'- gACGCCgcggacggggGCCGgGGaaGGGGCggagaccgcgaggaCGACGACg -3' miRNA: 3'- -UGCGGa---------UGGCgCCg-CCCCG--------------GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 11666 | 0.72 | 0.323419 |
Target: 5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3' miRNA: 3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 12390 | 0.66 | 0.661112 |
Target: 5'- uCGCCUucgggcgGCgGCGGCGGcGCCGggaucGCGAg -3' miRNA: 3'- uGCGGA-------UGgCGCCGCCcCGGC-----UGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 12604 | 0.67 | 0.60575 |
Target: 5'- gGCGCgCgguCCGCauGGCGGagcuggugaGGCCGAUGAUc -3' miRNA: 3'- -UGCG-Gau-GGCG--CCGCC---------CCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 13562 | 0.71 | 0.358472 |
Target: 5'- cCGCCgACCGCGuCGGGGCCG-CaGAUg -3' miRNA: 3'- uGCGGaUGGCGCcGCCCCGGCuG-CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 14476 | 0.68 | 0.558304 |
Target: 5'- gGCGCCcuuggGCCaggGCaGGgcgaacauggugcCGGGGCUGGCGACg -3' miRNA: 3'- -UGCGGa----UGG---CG-CC-------------GCCCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 15639 | 0.71 | 0.388372 |
Target: 5'- aACuCCUcgGCCGCgGGCGGcGaGCCGACGAg -3' miRNA: 3'- -UGcGGA--UGGCG-CCGCC-C-CGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 16252 | 0.67 | 0.60575 |
Target: 5'- uCGCCgucgcCCGCGGCGgccaagagucaGGGaCCGgacGCGACg -3' miRNA: 3'- uGCGGau---GGCGCCGC-----------CCC-GGC---UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 16488 | 0.66 | 0.662048 |
Target: 5'- aGCGUaUGgCGCaGCGGGGgccggaCCGACGAUa -3' miRNA: 3'- -UGCGgAUgGCGcCGCCCC------GGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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