miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 7359 0.71 0.373219
Target:  5'- -gGCCcACCGCGaCGGcGGCCG-CGGCg -3'
miRNA:   3'- ugCGGaUGGCGCcGCC-CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 7453 0.67 0.60575
Target:  5'- -gGCCcgggggaaGCCGCGGCGcGGCUGcCGGCc -3'
miRNA:   3'- ugCGGa-------UGGCGCCGCcCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 7705 0.69 0.461319
Target:  5'- gACGCCgGCCGCGGCccGGGaGuaGGCGuCg -3'
miRNA:   3'- -UGCGGaUGGCGCCG--CCC-CggCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 8449 0.71 0.388372
Target:  5'- cGCGCCccgGCCGCGGUccgcauGGcGGCCGuCgGACa -3'
miRNA:   3'- -UGCGGa--UGGCGCCG------CC-CCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 8624 0.66 0.637662
Target:  5'- cGCGCCccgcgucccccgacuUccGCCGCGGCc-GGCCGAuCGACc -3'
miRNA:   3'- -UGCGG---------------A--UGGCGCCGccCCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 8919 0.66 0.633905
Target:  5'- -gGCCagggcgGCCuCGGCcGGGUCGGCGAUg -3'
miRNA:   3'- ugCGGa-----UGGcGCCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 9487 0.67 0.615126
Target:  5'- -gGCCcGCgaGCGGCGGGuagaCGACGGCc -3'
miRNA:   3'- ugCGGaUGg-CGCCGCCCcg--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 9516 0.68 0.559226
Target:  5'- -gGCCccagcACgGCGGCGGcGGCC-ACGGCc -3'
miRNA:   3'- ugCGGa----UGgCGCCGCC-CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 10569 0.67 0.568465
Target:  5'- cACGCCgacgcucuccccgugGCCGCGGaCGacgaagcGGGCC-ACGGCg -3'
miRNA:   3'- -UGCGGa--------------UGGCGCC-GC-------CCCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 10675 0.65 0.677927
Target:  5'- uCGCCgagGCCggcccggcaguGCaGCGGGuacaggaagcgguaGCCGACGGCg -3'
miRNA:   3'- uGCGGa--UGG-----------CGcCGCCC--------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 10843 0.69 0.495985
Target:  5'- -aGCC--CCGCGcCGcGGCCGACGACg -3'
miRNA:   3'- ugCGGauGGCGCcGCcCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 11446 0.67 0.584256
Target:  5'- gACGCCgcggacggggGCCGgGGaaGGGGCggagaccgcgaggaCGACGACg -3'
miRNA:   3'- -UGCGGa---------UGGCgCCg-CCCCG--------------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 11666 0.72 0.323419
Target:  5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3'
miRNA:   3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 12390 0.66 0.661112
Target:  5'- uCGCCUucgggcgGCgGCGGCGGcGCCGggaucGCGAg -3'
miRNA:   3'- uGCGGA-------UGgCGCCGCCcCGGC-----UGCUg -5'
8949 3' -64.4 NC_002512.2 + 12604 0.67 0.60575
Target:  5'- gGCGCgCgguCCGCauGGCGGagcuggugaGGCCGAUGAUc -3'
miRNA:   3'- -UGCG-Gau-GGCG--CCGCC---------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 13562 0.71 0.358472
Target:  5'- cCGCCgACCGCGuCGGGGCCG-CaGAUg -3'
miRNA:   3'- uGCGGaUGGCGCcGCCCCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 14476 0.68 0.558304
Target:  5'- gGCGCCcuuggGCCaggGCaGGgcgaacauggugcCGGGGCUGGCGACg -3'
miRNA:   3'- -UGCGGa----UGG---CG-CC-------------GCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 15639 0.71 0.388372
Target:  5'- aACuCCUcgGCCGCgGGCGGcGaGCCGACGAg -3'
miRNA:   3'- -UGcGGA--UGGCG-CCGCC-C-CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 16252 0.67 0.60575
Target:  5'- uCGCCgucgcCCGCGGCGgccaagagucaGGGaCCGgacGCGACg -3'
miRNA:   3'- uGCGGau---GGCGCCGC-----------CCC-GGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 16488 0.66 0.662048
Target:  5'- aGCGUaUGgCGCaGCGGGGgccggaCCGACGAUa -3'
miRNA:   3'- -UGCGgAUgGCGcCGCCCC------GGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.