miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 137 0.73 0.278744
Target:  5'- aACGCCggggaGCCG-GGCGGGgcGCCGGCGGa -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCC--CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 2284 0.66 0.651741
Target:  5'- cCGCCcuccgGCCGCugcggguGGCGGGGCucugcugcgcCGGCGGu -3'
miRNA:   3'- uGCGGa----UGGCG-------CCGCCCCG----------GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 2792 0.68 0.540879
Target:  5'- -aGCCcgACC-CGGcCGGcGGCCGGCGGg -3'
miRNA:   3'- ugCGGa-UGGcGCC-GCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 3069 0.74 0.244481
Target:  5'- gACGCg-GCgGCGGCGGcGGCCacGGCGGCg -3'
miRNA:   3'- -UGCGgaUGgCGCCGCC-CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 3425 0.67 0.614188
Target:  5'- -gGCCUccucCCGCcucGCGGGGCUggucgguGACGGCg -3'
miRNA:   3'- ugCGGAu---GGCGc--CGCCCCGG-------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 4093 0.69 0.452853
Target:  5'- -gGCCgcCCGCGGCccGGCCGGCG-Ca -3'
miRNA:   3'- ugCGGauGGCGCCGccCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 4383 0.7 0.419058
Target:  5'- -aGCCcgggacccCCGCGGCGGccccguagaucgcGGUCGACGGCg -3'
miRNA:   3'- ugCGGau------GGCGCCGCC-------------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 4558 0.68 0.522738
Target:  5'- cGCGaCCgacgGCUGCGGCGucuGGGgCGGCGGa -3'
miRNA:   3'- -UGC-GGa---UGGCGCCGC---CCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 4598 0.71 0.358472
Target:  5'- gGCGCCgcggGCCGCGaGaCGGacGCCGAgGACg -3'
miRNA:   3'- -UGCGGa---UGGCGC-C-GCCc-CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 4659 0.67 0.587053
Target:  5'- cGCGCUaACgGCGGCGuuGGGCCuGuuGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGC--CCCGG-CugCUG- -5'
8949 3' -64.4 NC_002512.2 + 4912 0.7 0.395322
Target:  5'- gGCGCCgccgccGCCGCccagcggguagacGGCGGaGCCGAgCGACa -3'
miRNA:   3'- -UGCGGa-----UGGCG-------------CCGCCcCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 5167 0.72 0.337127
Target:  5'- gGCGCg-ACCGgGGCGGcGGCCGGCc-- -3'
miRNA:   3'- -UGCGgaUGGCgCCGCC-CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 5256 0.69 0.495103
Target:  5'- -gGCCgagGCCGCGGCGGcgaccccgagcccGGUCGGCa-- -3'
miRNA:   3'- ugCGGa--UGGCGCCGCC-------------CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 5302 0.71 0.354128
Target:  5'- cGCGcCCUgacguaacccggguaGCCGCGGUGGGGaUCGAUGGg -3'
miRNA:   3'- -UGC-GGA---------------UGGCGCCGCCCC-GGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 5497 0.67 0.60575
Target:  5'- cGCGCgU-CCGCGcCGGGGUCG-CGAg -3'
miRNA:   3'- -UGCGgAuGGCGCcGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 5754 0.67 0.59639
Target:  5'- cCGCCU-CC-CGGCGcGGGUCcACGGCc -3'
miRNA:   3'- uGCGGAuGGcGCCGC-CCCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 6072 0.66 0.671398
Target:  5'- cGCGCCgucgucguCC-CGGCGGucGCCGcCGACg -3'
miRNA:   3'- -UGCGGau------GGcGCCGCCc-CGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 6325 0.77 0.166096
Target:  5'- cCGCCgcCCGCGgggggaccgggcGCGGGGCCGGCGGg -3'
miRNA:   3'- uGCGGauGGCGC------------CGCCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 6420 0.7 0.411846
Target:  5'- gGCGCUggggaaggcgGCCGUcuGGCGGGcGCCGA-GACa -3'
miRNA:   3'- -UGCGGa---------UGGCG--CCGCCC-CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 7306 0.66 0.652679
Target:  5'- -gGCCUccuCCGCgacGGC-GGGCCG-CGGCg -3'
miRNA:   3'- ugCGGAu--GGCG---CCGcCCCGGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.