miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 219117 1.08 0.001019
Target:  5'- uACGCCUACCGCGGCGGGGCCGACGACg -3'
miRNA:   3'- -UGCGGAUGGCGCCGCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 115868 0.91 0.017633
Target:  5'- cGCGCCcggUGCCGCuGCGGGGCCGACGGCg -3'
miRNA:   3'- -UGCGG---AUGGCGcCGCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 142018 0.82 0.069887
Target:  5'- cCGUCUcuuCCGCGGCcgGGGGCCGGCGACc -3'
miRNA:   3'- uGCGGAu--GGCGCCG--CCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 173622 0.81 0.081772
Target:  5'- aGCGCCUccGCCGCGGCggcgaaccccgggucGGGGgCGGCGGCa -3'
miRNA:   3'- -UGCGGA--UGGCGCCG---------------CCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 81353 0.81 0.085032
Target:  5'- gGCGCCUcccUCGCGGcCGGGGCgGGCGGCg -3'
miRNA:   3'- -UGCGGAu--GGCGCC-GCCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 71579 0.81 0.091482
Target:  5'- cGCGCCggacgACCGCGGCcuugGGGGCCGGC-ACg -3'
miRNA:   3'- -UGCGGa----UGGCGCCG----CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 118781 0.8 0.098394
Target:  5'- gGCGCCUccGCCGCcgGGCGGGaGCUGugGGCc -3'
miRNA:   3'- -UGCGGA--UGGCG--CCGCCC-CGGCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 218215 0.8 0.105797
Target:  5'- cCGCCUcggGCCGCGGC-GGGCCG-CGGCg -3'
miRNA:   3'- uGCGGA---UGGCGCCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 45511 0.79 0.113722
Target:  5'- cACGCCgaaagcgcCCGCGGCGGGcGgCGGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCC-CgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 134652 0.79 0.116484
Target:  5'- aACGCCgugGCCGaGuGCGGGGCCGACG-Cg -3'
miRNA:   3'- -UGCGGa--UGGCgC-CGCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 215072 0.79 0.119309
Target:  5'- gGCGUCUACCGCgucGGCGGGaCCGAgGACu -3'
miRNA:   3'- -UGCGGAUGGCG---CCGCCCcGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 116732 0.79 0.125152
Target:  5'- cCGCCcgGCCGCGGCGaGGCCGGCGcCc -3'
miRNA:   3'- uGCGGa-UGGCGCCGCcCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 27748 0.78 0.144303
Target:  5'- cCGCC--CCGCGGCGGcGGCCGAgacCGGCg -3'
miRNA:   3'- uGCGGauGGCGCCGCC-CCGGCU---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 97356 0.77 0.149493
Target:  5'- gGCGCCgcccgcggagcggggACCGCGGCGgccggagacgggggcGGGCgCGACGACg -3'
miRNA:   3'- -UGCGGa--------------UGGCGCCGC---------------CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 126761 0.77 0.166096
Target:  5'- gACGCCUcggGgCGCGGCGGcGGC-GGCGACg -3'
miRNA:   3'- -UGCGGA---UgGCGCCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 6325 0.77 0.166096
Target:  5'- cCGCCgcCCGCGgggggaccgggcGCGGGGCCGGCGGg -3'
miRNA:   3'- uGCGGauGGCGC------------CGCCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 184119 0.77 0.170004
Target:  5'- uCGCCcACgGgGGCGGGuucGCCGACGACg -3'
miRNA:   3'- uGCGGaUGgCgCCGCCC---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 121155 0.76 0.176836
Target:  5'- gACGCCgGCCGCGGCccaGGGCgaggcguucucggaCGACGACg -3'
miRNA:   3'- -UGCGGaUGGCGCCGc--CCCG--------------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 102308 0.76 0.178066
Target:  5'- gACGCCUACaucgccgaGCGGCuGGGCCGgcuccgguACGACa -3'
miRNA:   3'- -UGCGGAUGg-------CGCCGcCCCGGC--------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 133588 0.76 0.186467
Target:  5'- -gGCCcgcCCGCGGCGGcGGCCcGCGGCa -3'
miRNA:   3'- ugCGGau-GGCGCCGCC-CCGGcUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.