miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 226198 0.65 0.679789
Target:  5'- cGCGCCguuaGCgCGCGGCcgggccaucaccgGGGaGCCGgaGCGAUc -3'
miRNA:   3'- -UGCGGa---UG-GCGCCG-------------CCC-CGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128987 0.65 0.679789
Target:  5'- cCGCCUGCUGCGuuucuucaacgcGCacuGGGGCCGGgaggaguucgaacCGGCc -3'
miRNA:   3'- uGCGGAUGGCGC------------CG---CCCCGGCU-------------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 10675 0.65 0.677927
Target:  5'- uCGCCgagGCCggcccggcaguGCaGCGGGuacaggaagcgguaGCCGACGGCg -3'
miRNA:   3'- uGCGGa--UGG-----------CGcCGCCC--------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 23993 0.66 0.671398
Target:  5'- -gGUC--CCGCGaGCGGGGaCCcGCGACg -3'
miRNA:   3'- ugCGGauGGCGC-CGCCCC-GGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 126388 0.66 0.671398
Target:  5'- aACGCgCUGCC-CGGCGaGcGGUCcGCGGCc -3'
miRNA:   3'- -UGCG-GAUGGcGCCGC-C-CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 204652 0.66 0.671398
Target:  5'- gACGgCgACgCGCGGgGGaucGCCGGCGGCu -3'
miRNA:   3'- -UGCgGaUG-GCGCCgCCc--CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 217581 0.66 0.671398
Target:  5'- -aGCCgguCCgGCGGCgccgccucgGGGGUCGuCGGCg -3'
miRNA:   3'- ugCGGau-GG-CGCCG---------CCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 151334 0.66 0.671398
Target:  5'- cCGCCc-UCGCGGCccGGCCGGCGcCa -3'
miRNA:   3'- uGCGGauGGCGCCGccCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 6072 0.66 0.671398
Target:  5'- cGCGCCgucgucguCC-CGGCGGucGCCGcCGACg -3'
miRNA:   3'- -UGCGGau------GGcGCCGCCc-CGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 44480 0.66 0.671398
Target:  5'- gGCGCCccgggGCCG-GGCGGaGaaGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCcCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 141605 0.66 0.671398
Target:  5'- gACGCUgcagACCGUGGCGgucgauuucGGGgaGACGAa -3'
miRNA:   3'- -UGCGGa---UGGCGCCGC---------CCCggCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 146092 0.66 0.671398
Target:  5'- cGCGCCcgaCGCGGUccucGGcGGCggCGGCGGCg -3'
miRNA:   3'- -UGCGGaugGCGCCG----CC-CCG--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94219 0.66 0.670464
Target:  5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 212376 0.66 0.667661
Target:  5'- uACGCCgacGCCGacgucgagaucgaGGaGGcGGCCGACGAg -3'
miRNA:   3'- -UGCGGa--UGGCg------------CCgCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 28052 0.66 0.665791
Target:  5'- cUGCCgGCCGCGGaaGGaGCCcccgggcgcggcggaGACGGCg -3'
miRNA:   3'- uGCGGaUGGCGCCgcCC-CGG---------------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 130271 0.66 0.662048
Target:  5'- gGCGacgACCGCGacgagcGCGGGGCCcGgGACg -3'
miRNA:   3'- -UGCggaUGGCGC------CGCCCCGGcUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 16488 0.66 0.662048
Target:  5'- aGCGUaUGgCGCaGCGGGGgccggaCCGACGAUa -3'
miRNA:   3'- -UGCGgAUgGCGcCGCCCC------GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94029 0.66 0.662048
Target:  5'- gACGCUcgguuUCGCGGCGGaucucuucGGC-GACGACg -3'
miRNA:   3'- -UGCGGau---GGCGCCGCC--------CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 129369 0.66 0.662048
Target:  5'- uCGCCUuCUGUcucGuGCGGGuGCuCGACGACc -3'
miRNA:   3'- uGCGGAuGGCG---C-CGCCC-CG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 103395 0.66 0.662048
Target:  5'- cGCGCCcaacGCCGgGGauccGGGCgacgCGACGACg -3'
miRNA:   3'- -UGCGGa---UGGCgCCgc--CCCG----GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.