miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 45106 0.66 0.662048
Target:  5'- -gGCCcggGCCaCGuccuCGGGGUCGACGACc -3'
miRNA:   3'- ugCGGa--UGGcGCc---GCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 18087 0.66 0.662048
Target:  5'- gUGC--GCCGCGGCGGgacGGCCcccGCGGCc -3'
miRNA:   3'- uGCGgaUGGCGCCGCC---CCGGc--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 103395 0.66 0.662048
Target:  5'- cGCGCCcaacGCCGgGGauccGGGCgacgCGACGACg -3'
miRNA:   3'- -UGCGGa---UGGCgCCgc--CCCG----GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 129369 0.66 0.662048
Target:  5'- uCGCCUuCUGUcucGuGCGGGuGCuCGACGACc -3'
miRNA:   3'- uGCGGAuGGCG---C-CGCCC-CG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 16488 0.66 0.662048
Target:  5'- aGCGUaUGgCGCaGCGGGGgccggaCCGACGAUa -3'
miRNA:   3'- -UGCGgAUgGCGcCGCCCC------GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94029 0.66 0.662048
Target:  5'- gACGCUcgguuUCGCGGCGGaucucuucGGC-GACGACg -3'
miRNA:   3'- -UGCGGau---GGCGCCGCC--------CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 191277 0.66 0.662048
Target:  5'- gGCGgCgACggggaggGCGGCGGGGCgGGgGACg -3'
miRNA:   3'- -UGCgGaUGg------CGCCGCCCCGgCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 103584 0.66 0.662048
Target:  5'- gACGCCUcgcagGCCacgagGGCGGuGUCGACGGCc -3'
miRNA:   3'- -UGCGGA-----UGGcg---CCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 12390 0.66 0.661112
Target:  5'- uCGCCUucgggcgGCgGCGGCGGcGCCGggaucGCGAg -3'
miRNA:   3'- uGCGGA-------UGgCGCCGCCcCGGC-----UGCUg -5'
8949 3' -64.4 NC_002512.2 + 18896 0.66 0.661112
Target:  5'- cACGCCgUACUGCgcggccacgcaGGCGcgacacaGGGCCcgGACGACc -3'
miRNA:   3'- -UGCGG-AUGGCG-----------CCGC-------CCCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 147607 0.66 0.661112
Target:  5'- uCGCCUcgacccgACCcuCGaCGGGGgCGACGACg -3'
miRNA:   3'- uGCGGA-------UGGc-GCcGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 199321 0.66 0.652679
Target:  5'- cGCGCUUACCGUuguaGuaGuGGGCCGcgcccACGGCg -3'
miRNA:   3'- -UGCGGAUGGCG----CcgC-CCCGGC-----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 221250 0.66 0.652679
Target:  5'- -gGCCgGCCGCGGCGGaaGUCgGGgGACg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCc-CGG-CUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 70878 0.66 0.652679
Target:  5'- cCGCCcGgCGCGGacgcCGGGGCCGcCGcCu -3'
miRNA:   3'- uGCGGaUgGCGCC----GCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 84460 0.66 0.652679
Target:  5'- uCGUCcagcACCGCGGCGGacgaGCCGAagaaGACc -3'
miRNA:   3'- uGCGGa---UGGCGCCGCCc---CGGCUg---CUG- -5'
8949 3' -64.4 NC_002512.2 + 7306 0.66 0.652679
Target:  5'- -gGCCUccuCCGCgacGGC-GGGCCG-CGGCg -3'
miRNA:   3'- ugCGGAu--GGCG---CCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 161601 0.66 0.652679
Target:  5'- aACGaCCUGCagaaaGCGGUGuGGGCCcACGuCc -3'
miRNA:   3'- -UGC-GGAUGg----CGCCGC-CCCGGcUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 122389 0.66 0.652679
Target:  5'- -aGCCgcagagACCGCuGC-GGGCCGgucGCGGCg -3'
miRNA:   3'- ugCGGa-----UGGCGcCGcCCCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 129919 0.66 0.652679
Target:  5'- -aGCC-ACCGCGGgGccaGGCCGAUcaGGCa -3'
miRNA:   3'- ugCGGaUGGCGCCgCc--CCGGCUG--CUG- -5'
8949 3' -64.4 NC_002512.2 + 2284 0.66 0.651741
Target:  5'- cCGCCcuccgGCCGCugcggguGGCGGGGCucugcugcgcCGGCGGu -3'
miRNA:   3'- uGCGGa----UGGCG-------CCGCCCCG----------GCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.