miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 45430 0.76 0.186896
Target:  5'- gGCGCCgGCCGCGGCGacucccuguccgacGCCGGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCGCCGCcc------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 90647 0.76 0.190797
Target:  5'- gGCGCCgcgGCCGCGGUcucggagucGGcGGCCG-CGGCg -3'
miRNA:   3'- -UGCGGa--UGGCGCCG---------CC-CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 164438 0.76 0.190797
Target:  5'- uCGCCgggaaGCCGCucggcgcccucGGCGGGGgCGACGACc -3'
miRNA:   3'- uGCGGa----UGGCG-----------CCGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 28221 0.76 0.194769
Target:  5'- uCGCCgaagaaggaACCGCGGcCGGGGCCGucgcgccgcgaguACGACg -3'
miRNA:   3'- uGCGGa--------UGGCGCC-GCCCCGGC-------------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 83795 0.76 0.195215
Target:  5'- cCGCCgaggACCGCGuCGGGcgcGCCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGCGCcGCCC---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 67961 0.75 0.21379
Target:  5'- cGCGCCgguucGCCGUGGCGuccgccggaggaGGGCCGGCG-Cg -3'
miRNA:   3'- -UGCGGa----UGGCGCCGC------------CCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 121763 0.75 0.218174
Target:  5'- cGCGCCUcucgggaccgcggACCGCcgaGGCGGGGacgccgaagaCGACGACg -3'
miRNA:   3'- -UGCGGA-------------UGGCG---CCGCCCCg---------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 96221 0.75 0.218666
Target:  5'- cACGgCgGCCGCGGCGGcGGC-GGCGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 29732 0.75 0.218666
Target:  5'- uCGcCCUACCGUGGCggcgcgcgagGGGGCCcGGCGAUc -3'
miRNA:   3'- uGC-GGAUGGCGCCG----------CCCCGG-CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 220357 0.75 0.22565
Target:  5'- aACGCCgugGCCGUGGCcgccgccgccgugcuGGGGCCGGCc-- -3'
miRNA:   3'- -UGCGGa--UGGCGCCG---------------CCCCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 128668 0.74 0.228701
Target:  5'- gGCGCCggaACCcgGCGGaCGGGGCCGucgugauCGGCa -3'
miRNA:   3'- -UGCGGa--UGG--CGCC-GCCCCGGCu------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 121342 0.74 0.228701
Target:  5'- uCGCU--CCgGCGGCGGGGCCguugGACGGCg -3'
miRNA:   3'- uGCGGauGG-CGCCGCCCCGG----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 116963 0.74 0.232304
Target:  5'- cGCGCCaccggGCCGCcgacgccccguccgGGC-GGGCCGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCG--------------CCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 146727 0.74 0.233863
Target:  5'- gGCGgCgGCCGCGGCcgccGGGcCCGACGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGc---CCC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 109936 0.74 0.244481
Target:  5'- aGCGCCacgaaguccACCGCGuGCGGGGgCGACGcCg -3'
miRNA:   3'- -UGCGGa--------UGGCGC-CGCCCCgGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 100051 0.74 0.244481
Target:  5'- gGCGCUgagACgcggggGCGGCGGcGCCGACGACg -3'
miRNA:   3'- -UGCGGa--UGg-----CGCCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 75560 0.74 0.244481
Target:  5'- -gGCUcGCCGgGGCGGGGCCGcCGcCg -3'
miRNA:   3'- ugCGGaUGGCgCCGCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 100134 0.74 0.244481
Target:  5'- cCGUCguggACgGCGGCGGaccGGUCGACGACa -3'
miRNA:   3'- uGCGGa---UGgCGCCGCC---CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 184541 0.74 0.244481
Target:  5'- -gGUCaGCCgGCGGCGcGGGCCGGCgGACg -3'
miRNA:   3'- ugCGGaUGG-CGCCGC-CCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 3069 0.74 0.244481
Target:  5'- gACGCg-GCgGCGGCGGcGGCCacGGCGGCg -3'
miRNA:   3'- -UGCGgaUGgCGCCGCC-CCGG--CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.