miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 28052 0.66 0.665791
Target:  5'- cUGCCgGCCGCGGaaGGaGCCcccgggcgcggcggaGACGGCg -3'
miRNA:   3'- uGCGGaUGGCGCCgcCC-CGG---------------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 118715 0.66 0.633905
Target:  5'- cCGCCUGCCGCuc----GCCGGCGACg -3'
miRNA:   3'- uGCGGAUGGCGccgcccCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 18896 0.66 0.661112
Target:  5'- cACGCCgUACUGCgcggccacgcaGGCGcgacacaGGGCCcgGACGACc -3'
miRNA:   3'- -UGCGG-AUGGCG-----------CCGC-------CCCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227651 0.66 0.662048
Target:  5'- cUGUgUGCCGCaGGCGaGacacgaagcgcGGCUGGCGACg -3'
miRNA:   3'- uGCGgAUGGCG-CCGC-C-----------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 18087 0.66 0.662048
Target:  5'- gUGC--GCCGCGGCGGgacGGCCcccGCGGCc -3'
miRNA:   3'- uGCGgaUGGCGCCGCC---CCGGc--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 44480 0.66 0.671398
Target:  5'- gGCGCCccgggGCCG-GGCGGaGaaGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCcCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 121213 0.66 0.633905
Target:  5'- aGCGCCcucgUCGuCGGCGGGGaguacaUGugGACc -3'
miRNA:   3'- -UGCGGau--GGC-GCCGCCCCg-----GCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 84460 0.66 0.652679
Target:  5'- uCGUCcagcACCGCGGCGGacgaGCCGAagaaGACc -3'
miRNA:   3'- uGCGGa---UGGCGCCGCCc---CGGCUg---CUG- -5'
8949 3' -64.4 NC_002512.2 + 141605 0.66 0.671398
Target:  5'- gACGCUgcagACCGUGGCGgucgauuucGGGgaGACGAa -3'
miRNA:   3'- -UGCGGa---UGGCGCCGC---------CCCggCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 94029 0.66 0.662048
Target:  5'- gACGCUcgguuUCGCGGCGGaucucuucGGC-GACGACg -3'
miRNA:   3'- -UGCGGau---GGCGCCGCC--------CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 129369 0.66 0.662048
Target:  5'- uCGCCUuCUGUcucGuGCGGGuGCuCGACGACc -3'
miRNA:   3'- uGCGGAuGGCG---C-CGCCC-CG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 78552 0.66 0.624513
Target:  5'- gGCGCCgGCCGgGccGCGaGGGCgGAUGGa -3'
miRNA:   3'- -UGCGGaUGGCgC--CGC-CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 95946 0.66 0.662048
Target:  5'- cGCGCCcuCCgGCGG-GGGGCUGA-GGCc -3'
miRNA:   3'- -UGCGGauGG-CGCCgCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 121709 0.66 0.633905
Target:  5'- cCGCCcugaacGCCGCaGaaGGcGCCGGCGACg -3'
miRNA:   3'- uGCGGa-----UGGCGcCgcCC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 8919 0.66 0.633905
Target:  5'- -gGCCagggcgGCCuCGGCcGGGUCGGCGAUg -3'
miRNA:   3'- ugCGGa-----UGGcGCCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 2284 0.66 0.651741
Target:  5'- cCGCCcuccgGCCGCugcggguGGCGGGGCucugcugcgcCGGCGGu -3'
miRNA:   3'- uGCGGa----UGGCG-------CCGCCCCG----------GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 12390 0.66 0.661112
Target:  5'- uCGCCUucgggcgGCgGCGGCGGcGCCGggaucGCGAg -3'
miRNA:   3'- uGCGGA-------UGgCGCCGCCcCGGC-----UGCUg -5'
8949 3' -64.4 NC_002512.2 + 130271 0.66 0.662048
Target:  5'- gGCGacgACCGCGacgagcGCGGGGCCcGgGACg -3'
miRNA:   3'- -UGCggaUGGCGC------CGCCCCGGcUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 80818 0.66 0.624513
Target:  5'- cGCGCCUcggcguCgGCGGaGGGGCCccguaGGCGAg -3'
miRNA:   3'- -UGCGGAu-----GgCGCCgCCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 16488 0.66 0.662048
Target:  5'- aGCGUaUGgCGCaGCGGGGgccggaCCGACGAUa -3'
miRNA:   3'- -UGCGgAUgGCGcCGCCCC------GGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.