miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 128987 0.65 0.679789
Target:  5'- cCGCCUGCUGCGuuucuucaacgcGCacuGGGGCCGGgaggaguucgaacCGGCc -3'
miRNA:   3'- uGCGGAUGGCGC------------CG---CCCCGGCU-------------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 226198 0.65 0.679789
Target:  5'- cGCGCCguuaGCgCGCGGCcgggccaucaccgGGGaGCCGgaGCGAUc -3'
miRNA:   3'- -UGCGGa---UG-GCGCCG-------------CCC-CGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 10675 0.65 0.677927
Target:  5'- uCGCCgagGCCggcccggcaguGCaGCGGGuacaggaagcgguaGCCGACGGCg -3'
miRNA:   3'- uGCGGa--UGG-----------CGcCGCCC--------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 91976 0.66 0.624513
Target:  5'- cACGuCCggaggGCCGCGucCGGGucucccgcgucGCCGGCGGCg -3'
miRNA:   3'- -UGC-GGa----UGGCGCc-GCCC-----------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 118488 0.66 0.633905
Target:  5'- gGCGCCgagcUGCCGgGGCGGGa-CGGCuACg -3'
miRNA:   3'- -UGCGG----AUGGCgCCGCCCcgGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 36981 0.66 0.633905
Target:  5'- gGCGgCUcuggACCGCcGCGGaGCgCGACGGCg -3'
miRNA:   3'- -UGCgGA----UGGCGcCGCCcCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 7306 0.66 0.652679
Target:  5'- -gGCCUccuCCGCgacGGC-GGGCCG-CGGCg -3'
miRNA:   3'- ugCGGAu--GGCG---CCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 8624 0.66 0.637662
Target:  5'- cGCGCCccgcgucccccgacuUccGCCGCGGCc-GGCCGAuCGACc -3'
miRNA:   3'- -UGCGG---------------A--UGGCGCCGccCCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 121213 0.66 0.633905
Target:  5'- aGCGCCcucgUCGuCGGCGGGGaguacaUGugGACc -3'
miRNA:   3'- -UGCGGau--GGC-GCCGCCCCg-----GCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 121995 0.66 0.633905
Target:  5'- -aGCCUuuaucggcGCC-CGGaGGGGCCGgagGCGGCg -3'
miRNA:   3'- ugCGGA--------UGGcGCCgCCCCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 78552 0.66 0.624513
Target:  5'- gGCGCCgGCCGgGccGCGaGGGCgGAUGGa -3'
miRNA:   3'- -UGCGGaUGGCgC--CGC-CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 135333 0.66 0.624513
Target:  5'- gGCGUCaGCCGCGcCGGggugcugcuGGCCGuCGACc -3'
miRNA:   3'- -UGCGGaUGGCGCcGCC---------CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 84460 0.66 0.652679
Target:  5'- uCGUCcagcACCGCGGCGGacgaGCCGAagaaGACc -3'
miRNA:   3'- uGCGGa---UGGCGCCGCCc---CGGCUg---CUG- -5'
8949 3' -64.4 NC_002512.2 + 8919 0.66 0.633905
Target:  5'- -gGCCagggcgGCCuCGGCcGGGUCGGCGAUg -3'
miRNA:   3'- ugCGGa-----UGGcGCCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 70878 0.66 0.652679
Target:  5'- cCGCCcGgCGCGGacgcCGGGGCCGcCGcCu -3'
miRNA:   3'- uGCGGaUgGCGCC----GCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 224075 0.66 0.643296
Target:  5'- gACGCC-GCCGaa-CGGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCgccGCCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 2284 0.66 0.651741
Target:  5'- cCGCCcuccgGCCGCugcggguGGCGGGGCucugcugcgcCGGCGGu -3'
miRNA:   3'- uGCGGa----UGGCG-------CCGCCCCG----------GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 22732 0.66 0.624513
Target:  5'- -aG-CUACCGCgGGCGGcuGCUGACGAUc -3'
miRNA:   3'- ugCgGAUGGCG-CCGCCc-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 121709 0.66 0.633905
Target:  5'- cCGCCcugaacGCCGCaGaaGGcGCCGGCGACg -3'
miRNA:   3'- uGCGGa-----UGGCGcCgcCC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 118715 0.66 0.633905
Target:  5'- cCGCCUGCCGCuc----GCCGGCGACg -3'
miRNA:   3'- uGCGGAUGGCGccgcccCGGCUGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.