Results 1 - 20 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 128987 | 0.65 | 0.679789 |
Target: 5'- cCGCCUGCUGCGuuucuucaacgcGCacuGGGGCCGGgaggaguucgaacCGGCc -3' miRNA: 3'- uGCGGAUGGCGC------------CG---CCCCGGCU-------------GCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 10675 | 0.65 | 0.677927 |
Target: 5'- uCGCCgagGCCggcccggcaguGCaGCGGGuacaggaagcgguaGCCGACGGCg -3' miRNA: 3'- uGCGGa--UGG-----------CGcCGCCC--------------CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 226198 | 0.65 | 0.679789 |
Target: 5'- cGCGCCguuaGCgCGCGGCcgggccaucaccgGGGaGCCGgaGCGAUc -3' miRNA: 3'- -UGCGGa---UG-GCGCCG-------------CCC-CGGC--UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 36981 | 0.66 | 0.633905 |
Target: 5'- gGCGgCUcuggACCGCcGCGGaGCgCGACGGCg -3' miRNA: 3'- -UGCgGA----UGGCGcCGCCcCG-GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 121995 | 0.66 | 0.633905 |
Target: 5'- -aGCCUuuaucggcGCC-CGGaGGGGCCGgagGCGGCg -3' miRNA: 3'- ugCGGA--------UGGcGCCgCCCCGGC---UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 135333 | 0.66 | 0.624513 |
Target: 5'- gGCGUCaGCCGCGcCGGggugcugcuGGCCGuCGACc -3' miRNA: 3'- -UGCGGaUGGCGCcGCC---------CCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 22732 | 0.66 | 0.624513 |
Target: 5'- -aG-CUACCGCgGGCGGcuGCUGACGAUc -3' miRNA: 3'- ugCgGAUGGCG-CCGCCc-CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 121709 | 0.66 | 0.633905 |
Target: 5'- cCGCCcugaacGCCGCaGaaGGcGCCGGCGACg -3' miRNA: 3'- uGCGGa-----UGGCGcCgcCC-CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 8624 | 0.66 | 0.637662 |
Target: 5'- cGCGCCccgcgucccccgacuUccGCCGCGGCc-GGCCGAuCGACc -3' miRNA: 3'- -UGCGG---------------A--UGGCGCCGccCCGGCU-GCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 118715 | 0.66 | 0.633905 |
Target: 5'- cCGCCUGCCGCuc----GCCGGCGACg -3' miRNA: 3'- uGCGGAUGGCGccgcccCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 7306 | 0.66 | 0.652679 |
Target: 5'- -gGCCUccuCCGCgacGGC-GGGCCG-CGGCg -3' miRNA: 3'- ugCGGAu--GGCG---CCGcCCCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 78552 | 0.66 | 0.624513 |
Target: 5'- gGCGCCgGCCGgGccGCGaGGGCgGAUGGa -3' miRNA: 3'- -UGCGGaUGGCgC--CGC-CCCGgCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 118488 | 0.66 | 0.633905 |
Target: 5'- gGCGCCgagcUGCCGgGGCGGGa-CGGCuACg -3' miRNA: 3'- -UGCGG----AUGGCgCCGCCCcgGCUGcUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 224075 | 0.66 | 0.643296 |
Target: 5'- gACGCC-GCCGaa-CGGGGC-GGCGGCg -3' miRNA: 3'- -UGCGGaUGGCgccGCCCCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 2284 | 0.66 | 0.651741 |
Target: 5'- cCGCCcuccgGCCGCugcggguGGCGGGGCucugcugcgcCGGCGGu -3' miRNA: 3'- uGCGGa----UGGCG-------CCGCCCCG----------GCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 8919 | 0.66 | 0.633905 |
Target: 5'- -gGCCagggcgGCCuCGGCcGGGUCGGCGAUg -3' miRNA: 3'- ugCGGa-----UGGcGCCGcCCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 91976 | 0.66 | 0.624513 |
Target: 5'- cACGuCCggaggGCCGCGucCGGGucucccgcgucGCCGGCGGCg -3' miRNA: 3'- -UGC-GGa----UGGCGCc-GCCC-----------CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 122795 | 0.66 | 0.623574 |
Target: 5'- gGCGCCggGCCcugGCGGCGGGuccccuacguccaGCgCGuCGACc -3' miRNA: 3'- -UGCGGa-UGG---CGCCGCCC-------------CG-GCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 84460 | 0.66 | 0.652679 |
Target: 5'- uCGUCcagcACCGCGGCGGacgaGCCGAagaaGACc -3' miRNA: 3'- uGCGGa---UGGCGCCGCCc---CGGCUg---CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 70878 | 0.66 | 0.652679 |
Target: 5'- cCGCCcGgCGCGGacgcCGGGGCCGcCGcCu -3' miRNA: 3'- uGCGGaUgGCGCC----GCCCCGGCuGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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