miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 229540 0.73 0.278744
Target:  5'- aACGCCggggaGCCG-GGCGGGgcGCCGGCGGa -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCC--CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 229024 0.68 0.559226
Target:  5'- -gGUgUGCaGCGGUGGGGCUGAUaauGGCa -3'
miRNA:   3'- ugCGgAUGgCGCCGCCCCGGCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 228569 0.69 0.478498
Target:  5'- gACGCUuccuUACCGCGGUcGuGUCGGCGGCa -3'
miRNA:   3'- -UGCGG----AUGGCGCCGcCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 228052 0.73 0.272778
Target:  5'- gACGCCcgcggacgGCUGCGGCGcGGGa-GACGACg -3'
miRNA:   3'- -UGCGGa-------UGGCGCCGC-CCCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227652 0.68 0.504836
Target:  5'- aGCGCCcggguCCggaggaagaGCGGCGGcgccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau---GG---------CGCCGCCc---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227651 0.66 0.662048
Target:  5'- cUGUgUGCCGCaGGCGaGacacgaagcgcGGCUGGCGACg -3'
miRNA:   3'- uGCGgAUGGCG-CCGC-C-----------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227599 0.68 0.559226
Target:  5'- cCGCC-ACCcgcaGCGGCcggaGGGCgGGCGGCg -3'
miRNA:   3'- uGCGGaUGG----CGCCGc---CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227505 0.73 0.278744
Target:  5'- gACGCCgcgACC-CGGgGGGGagaguCCGGCGGCg -3'
miRNA:   3'- -UGCGGa--UGGcGCCgCCCC-----GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227093 0.67 0.60575
Target:  5'- cCGCCgGCCGcCGGCcGGGUCGGgcucaGACg -3'
miRNA:   3'- uGCGGaUGGC-GCCGcCCCGGCUg----CUG- -5'
8949 3' -64.4 NC_002512.2 + 227078 0.68 0.550028
Target:  5'- uAUGUCUACUGgagacacaGGUGGGGCgaacgaggcggCGACGACg -3'
miRNA:   3'- -UGCGGAUGGCg-------CCGCCCCG-----------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 226687 0.73 0.284813
Target:  5'- aGCGCCgggccgucgcCCGCGGCGGcGUCGAgCGACg -3'
miRNA:   3'- -UGCGGau--------GGCGCCGCCcCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 226369 0.68 0.522738
Target:  5'- -gGCC--CCGCGGgcuCGGguggagGGCCGACGACg -3'
miRNA:   3'- ugCGGauGGCGCC---GCC------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 226293 0.66 0.633905
Target:  5'- uGCGCCUGuccccgagacccCCGgGGCcuguGGGCCGugG-Cu -3'
miRNA:   3'- -UGCGGAU------------GGCgCCGc---CCCGGCugCuG- -5'
8949 3' -64.4 NC_002512.2 + 226198 0.65 0.679789
Target:  5'- cGCGCCguuaGCgCGCGGCcgggccaucaccgGGGaGCCGgaGCGAUc -3'
miRNA:   3'- -UGCGGa---UG-GCGCCG-------------CCC-CGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 225792 0.66 0.624513
Target:  5'- uGCGCCggccggGCCGCgGGCGGccggguGGCCuGgGACc -3'
miRNA:   3'- -UGCGGa-----UGGCG-CCGCC------CCGGcUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 225725 0.69 0.477631
Target:  5'- cCGCgaGCCGCGGCgacucgcucagucGGGGCgCGGCcggGACa -3'
miRNA:   3'- uGCGgaUGGCGCCG-------------CCCCG-GCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 225482 0.7 0.427975
Target:  5'- cCGCCgucgACCGCGaucuaCGGGGCCGccGCGGg -3'
miRNA:   3'- uGCGGa---UGGCGCc----GCCCCGGC--UGCUg -5'
8949 3' -64.4 NC_002512.2 + 225410 0.69 0.452853
Target:  5'- gGCGCCgggGUCGgGGUcggguuGGGGCCGACGcCg -3'
miRNA:   3'- -UGCGGa--UGGCgCCG------CCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 224967 0.69 0.478498
Target:  5'- cCGUCUAcCCGCugGGCGGcGGC-GGCGGCg -3'
miRNA:   3'- uGCGGAU-GGCG--CCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 224679 0.67 0.61888
Target:  5'- cCGCCgucggcuggcCCGCGGUccugcccgcccugcuGGGGCCGGCcGCc -3'
miRNA:   3'- uGCGGau--------GGCGCCG---------------CCCCGGCUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.