miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 224075 0.66 0.643296
Target:  5'- gACGCC-GCCGaa-CGGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCgccGCCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 223558 0.68 0.540879
Target:  5'- cGCGCCcgguccccCCGCgGGCGGcGGCCaccuCGACg -3'
miRNA:   3'- -UGCGGau------GGCG-CCGCC-CCGGcu--GCUG- -5'
8949 3' -64.4 NC_002512.2 + 222640 0.67 0.567539
Target:  5'- gACGCCgcuccGCCGCgacggccGGCcGGGCCGAgGGg -3'
miRNA:   3'- -UGCGGa----UGGCG-------CCGcCCCGGCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 222512 0.72 0.310131
Target:  5'- uGCGCCUggccgcccGCCGCGGCcgccgucgcgGuGGGCCGggcuACGGCg -3'
miRNA:   3'- -UGCGGA--------UGGCGCCG----------C-CCCGGC----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 222434 0.66 0.633905
Target:  5'- cCGC--GCCGCGGCuucccccGGGCCG-CGGCc -3'
miRNA:   3'- uGCGgaUGGCGCCGc------CCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 222405 0.73 0.272778
Target:  5'- aGCGCCgcgGCUuCGGCGGGGgCCGGCaGCc -3'
miRNA:   3'- -UGCGGa--UGGcGCCGCCCC-GGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 222339 0.67 0.58612
Target:  5'- gGCGCCU-CCaggaggaggaggaGCGGCacGGGGCCGccuucccCGGCg -3'
miRNA:   3'- -UGCGGAuGG-------------CGCCG--CCCCGGCu------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 222176 0.67 0.577743
Target:  5'- gACGCCUAcucCCG-GGCcGcGGCCGGCGuCg -3'
miRNA:   3'- -UGCGGAU---GGCgCCGcC-CCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 221434 0.71 0.358472
Target:  5'- cCGCCaugcggACCGCGGcCGGGGCgCGGucgucCGACc -3'
miRNA:   3'- uGCGGa-----UGGCGCC-GCCCCG-GCU-----GCUG- -5'
8949 3' -64.4 NC_002512.2 + 221250 0.66 0.652679
Target:  5'- -gGCCgGCCGCGGCGGaaGUCgGGgGACg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCc-CGG-CUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 220857 0.68 0.51286
Target:  5'- cGCGUCUAcgucguCCGCGGggccuCGGcgcucuccaucguGGCCGACGACc -3'
miRNA:   3'- -UGCGGAU------GGCGCC-----GCC-------------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 220357 0.75 0.22565
Target:  5'- aACGCCgugGCCGUGGCcgccgccgccgugcuGGGGCCGGCc-- -3'
miRNA:   3'- -UGCGGa--UGGCGCCG---------------CCCCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 220301 0.73 0.297263
Target:  5'- cCGCCgaGCCGCcGgGGGGCCGGgGGCc -3'
miRNA:   3'- uGCGGa-UGGCGcCgCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 219117 1.08 0.001019
Target:  5'- uACGCCUACCGCGGCGGGGCCGACGACg -3'
miRNA:   3'- -UGCGGAUGGCGCCGCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 219042 0.68 0.522738
Target:  5'- uACGUCgucgGCCGCGGCgcGGGGCUccccGCGGg -3'
miRNA:   3'- -UGCGGa---UGGCGCCG--CCCCGGc---UGCUg -5'
8949 3' -64.4 NC_002512.2 + 218215 0.8 0.105797
Target:  5'- cCGCCUcggGCCGCGGC-GGGCCG-CGGCg -3'
miRNA:   3'- uGCGGA---UGGCGCCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 217932 0.68 0.53178
Target:  5'- cGCGUCUucguggggACCGgGGCGGGGa--ACGACu -3'
miRNA:   3'- -UGCGGA--------UGGCgCCGCCCCggcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 217581 0.66 0.671398
Target:  5'- -aGCCgguCCgGCGGCgccgccucgGGGGUCGuCGGCg -3'
miRNA:   3'- ugCGGau-GG-CGCCG---------CCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 215200 0.68 0.504836
Target:  5'- -gGUCUACCucuucguCGGCGGGGCgGACaACg -3'
miRNA:   3'- ugCGGAUGGc------GCCGCCCCGgCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 215109 0.68 0.513755
Target:  5'- cCGCCgcgGCCGaccgccagaaCGGcCGGGGuCCGcGCGACg -3'
miRNA:   3'- uGCGGa--UGGC----------GCC-GCCCC-GGC-UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.