Results 1 - 20 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 161601 | 0.66 | 0.652679 |
Target: 5'- aACGaCCUGCagaaaGCGGUGuGGGCCcACGuCc -3' miRNA: 3'- -UGC-GGAUGg----CGCCGC-CCCGGcUGCuG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 128987 | 0.65 | 0.679789 |
Target: 5'- cCGCCUGCUGCGuuucuucaacgcGCacuGGGGCCGGgaggaguucgaacCGGCc -3' miRNA: 3'- uGCGGAUGGCGC------------CG---CCCCGGCU-------------GCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 151334 | 0.66 | 0.671398 |
Target: 5'- cCGCCc-UCGCGGCccGGCCGGCGcCa -3' miRNA: 3'- uGCGGauGGCGCCGccCCGGCUGCuG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 191277 | 0.66 | 0.662048 |
Target: 5'- gGCGgCgACggggaggGCGGCGGGGCgGGgGACg -3' miRNA: 3'- -UGCgGaUGg------CGCCGCCCCGgCUgCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 103584 | 0.66 | 0.662048 |
Target: 5'- gACGCCUcgcagGCCacgagGGCGGuGUCGACGGCc -3' miRNA: 3'- -UGCGGA-----UGGcg---CCGCCcCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 146092 | 0.66 | 0.671398 |
Target: 5'- cGCGCCcgaCGCGGUccucGGcGGCggCGGCGGCg -3' miRNA: 3'- -UGCGGaugGCGCCG----CC-CCG--GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 212376 | 0.66 | 0.667661 |
Target: 5'- uACGCCgacGCCGacgucgagaucgaGGaGGcGGCCGACGAg -3' miRNA: 3'- -UGCGGa--UGGCg------------CCgCC-CCGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 95554 | 0.66 | 0.662048 |
Target: 5'- -aGCUcgGCCGCGGCGaGuccgucggcgccGGCCccGGCGACg -3' miRNA: 3'- ugCGGa-UGGCGCCGC-C------------CCGG--CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 221250 | 0.66 | 0.652679 |
Target: 5'- -gGCCgGCCGCGGCGGaaGUCgGGgGACg -3' miRNA: 3'- ugCGGaUGGCGCCGCCc-CGG-CUgCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 99312 | 0.66 | 0.643296 |
Target: 5'- cCGCCcGCuCGCGGCGGccuaCGACGAa -3' miRNA: 3'- uGCGGaUG-GCGCCGCCccg-GCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 219117 | 1.08 | 0.001019 |
Target: 5'- uACGCCUACCGCGGCGGGGCCGACGACg -3' miRNA: 3'- -UGCGGAUGGCGCCGCCCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 217581 | 0.66 | 0.671398 |
Target: 5'- -aGCCgguCCgGCGGCgccgccucgGGGGUCGuCGGCg -3' miRNA: 3'- ugCGGau-GG-CGCCG---------CCCCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 204652 | 0.66 | 0.671398 |
Target: 5'- gACGgCgACgCGCGGgGGaucGCCGGCGGCu -3' miRNA: 3'- -UGCgGaUG-GCGCCgCCc--CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 199321 | 0.66 | 0.652679 |
Target: 5'- cGCGCUUACCGUuguaGuaGuGGGCCGcgcccACGGCg -3' miRNA: 3'- -UGCGGAUGGCG----CcgC-CCCGGC-----UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 122389 | 0.66 | 0.652679 |
Target: 5'- -aGCCgcagagACCGCuGC-GGGCCGgucGCGGCg -3' miRNA: 3'- ugCGGa-----UGGCGcCGcCCCGGC---UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 94219 | 0.66 | 0.670464 |
Target: 5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3' miRNA: 3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 191066 | 0.66 | 0.651741 |
Target: 5'- cGCGCCUGgCGCuGGCugugcggcaagugGGGGUgGAUGGu -3' miRNA: 3'- -UGCGGAUgGCG-CCG-------------CCCCGgCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 148076 | 0.66 | 0.643296 |
Target: 5'- cGCGCCgcggucguCCGUcccccGGCGGcGGC-GGCGGCg -3' miRNA: 3'- -UGCGGau------GGCG-----CCGCC-CCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 213637 | 0.66 | 0.662048 |
Target: 5'- -gGCC-GCCGCgGGCGacGGCgaCGACGACg -3' miRNA: 3'- ugCGGaUGGCG-CCGCc-CCG--GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 147607 | 0.66 | 0.661112 |
Target: 5'- uCGCCUcgacccgACCcuCGaCGGGGgCGACGACg -3' miRNA: 3'- uGCGGA-------UGGc-GCcGCCCCgGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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