miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 128987 0.65 0.679789
Target:  5'- cCGCCUGCUGCGuuucuucaacgcGCacuGGGGCCGGgaggaguucgaacCGGCc -3'
miRNA:   3'- uGCGGAUGGCGC------------CG---CCCCGGCU-------------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 191066 0.66 0.651741
Target:  5'- cGCGCCUGgCGCuGGCugugcggcaagugGGGGUgGAUGGu -3'
miRNA:   3'- -UGCGGAUgGCG-CCG-------------CCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 148076 0.66 0.643296
Target:  5'- cGCGCCgcggucguCCGUcccccGGCGGcGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCG-----CCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 219117 1.08 0.001019
Target:  5'- uACGCCUACCGCGGCGGGGCCGACGACg -3'
miRNA:   3'- -UGCGGAUGGCGCCGCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 217581 0.66 0.671398
Target:  5'- -aGCCgguCCgGCGGCgccgccucgGGGGUCGuCGGCg -3'
miRNA:   3'- ugCGGau-GG-CGCCG---------CCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94219 0.66 0.670464
Target:  5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 213637 0.66 0.662048
Target:  5'- -gGCC-GCCGCgGGCGacGGCgaCGACGACg -3'
miRNA:   3'- ugCGGaUGGCG-CCGCc-CCG--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95554 0.66 0.662048
Target:  5'- -aGCUcgGCCGCGGCGaGuccgucggcgccGGCCccGGCGACg -3'
miRNA:   3'- ugCGGa-UGGCGCCGC-C------------CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 147607 0.66 0.661112
Target:  5'- uCGCCUcgacccgACCcuCGaCGGGGgCGACGACg -3'
miRNA:   3'- uGCGGA-------UGGc-GCcGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 129919 0.66 0.652679
Target:  5'- -aGCC-ACCGCGGgGccaGGCCGAUcaGGCa -3'
miRNA:   3'- ugCGGaUGGCGCCgCc--CCGGCUG--CUG- -5'
8949 3' -64.4 NC_002512.2 + 122389 0.66 0.652679
Target:  5'- -aGCCgcagagACCGCuGC-GGGCCGgucGCGGCg -3'
miRNA:   3'- ugCGGa-----UGGCGcCGcCCCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 103584 0.66 0.662048
Target:  5'- gACGCCUcgcagGCCacgagGGCGGuGUCGACGGCc -3'
miRNA:   3'- -UGCGGA-----UGGcg---CCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 151334 0.66 0.671398
Target:  5'- cCGCCc-UCGCGGCccGGCCGGCGcCa -3'
miRNA:   3'- uGCGGauGGCGCCGccCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 221250 0.66 0.652679
Target:  5'- -gGCCgGCCGCGGCGGaaGUCgGGgGACg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCc-CGG-CUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 146092 0.66 0.671398
Target:  5'- cGCGCCcgaCGCGGUccucGGcGGCggCGGCGGCg -3'
miRNA:   3'- -UGCGGaugGCGCCG----CC-CCG--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 191277 0.66 0.662048
Target:  5'- gGCGgCgACggggaggGCGGCGGGGCgGGgGACg -3'
miRNA:   3'- -UGCgGaUGg------CGCCGCCCCGgCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 161601 0.66 0.652679
Target:  5'- aACGaCCUGCagaaaGCGGUGuGGGCCcACGuCc -3'
miRNA:   3'- -UGC-GGAUGg----CGCCGC-CCCGGcUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 99312 0.66 0.643296
Target:  5'- cCGCCcGCuCGCGGCGGccuaCGACGAa -3'
miRNA:   3'- uGCGGaUG-GCGCCGCCccg-GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 204652 0.66 0.671398
Target:  5'- gACGgCgACgCGCGGgGGaucGCCGGCGGCu -3'
miRNA:   3'- -UGCgGaUG-GCGCCgCCc--CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 212376 0.66 0.667661
Target:  5'- uACGCCgacGCCGacgucgagaucgaGGaGGcGGCCGACGAg -3'
miRNA:   3'- -UGCGGa--UGGCg------------CCgCC-CCGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.