miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 200792 0.68 0.504836
Target:  5'- cCGCC-GCCGCcgaagacgaGGCGGGaCgCGACGGCa -3'
miRNA:   3'- uGCGGaUGGCG---------CCGCCCcG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 199978 0.67 0.59639
Target:  5'- cCGCCgcguCCGCgcgcccGGCGGGGaCGAgCGGCc -3'
miRNA:   3'- uGCGGau--GGCG------CCGCCCCgGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 199321 0.66 0.652679
Target:  5'- cGCGCUUACCGUuguaGuaGuGGGCCGcgcccACGGCg -3'
miRNA:   3'- -UGCGGAUGGCG----CcgC-CCCGGC-----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 198154 0.67 0.577743
Target:  5'- cGCGCggGCCGgguCGGCGccGGCCGGCGGa -3'
miRNA:   3'- -UGCGgaUGGC---GCCGCc-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 193815 0.67 0.587053
Target:  5'- uCGC--GCCGCuuCGGGGUCGGCGAUa -3'
miRNA:   3'- uGCGgaUGGCGccGCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 193375 0.66 0.633905
Target:  5'- uCGUC-GCCGCgGGCGGGGaCGACa-- -3'
miRNA:   3'- uGCGGaUGGCG-CCGCCCCgGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 192894 0.66 0.643296
Target:  5'- aGCGCCgucgcgcuCCGCGGCGGuccagaGCCGccucCGAUg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCc-----CGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 192807 0.68 0.513755
Target:  5'- aACGCCacCCGgGGCgaucgcaccGGGGCCagGugGACg -3'
miRNA:   3'- -UGCGGauGGCgCCG---------CCCCGG--CugCUG- -5'
8949 3' -64.4 NC_002512.2 + 192598 0.69 0.469868
Target:  5'- cCG-CUGCUGCGGCGcgcgcGGCgGGCGACg -3'
miRNA:   3'- uGCgGAUGGCGCCGCc----CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 192562 0.67 0.60575
Target:  5'- aGCGCgU-CCGUGGcCGGGGCCu-CGGa -3'
miRNA:   3'- -UGCGgAuGGCGCC-GCCCCGGcuGCUg -5'
8949 3' -64.4 NC_002512.2 + 191308 0.68 0.504836
Target:  5'- --aCCaACCGCGGCGGGGUCaagguggucuGCGGCg -3'
miRNA:   3'- ugcGGaUGGCGCCGCCCCGGc---------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 191277 0.66 0.662048
Target:  5'- gGCGgCgACggggaggGCGGCGGGGCgGGgGACg -3'
miRNA:   3'- -UGCgGaUGg------CGCCGCCCCGgCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 191066 0.66 0.651741
Target:  5'- cGCGCCUGgCGCuGGCugugcggcaagugGGGGUgGAUGGu -3'
miRNA:   3'- -UGCGGAUgGCG-CCG-------------CCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 191029 0.72 0.323419
Target:  5'- gUGCCUGCga-GGCGGGGCgCGGCGcACg -3'
miRNA:   3'- uGCGGAUGgcgCCGCCCCG-GCUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 190961 0.74 0.244481
Target:  5'- gGCGCCcGCCGCGGCGGccccuCCGGCGcCg -3'
miRNA:   3'- -UGCGGaUGGCGCCGCCcc---GGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 190418 0.68 0.550028
Target:  5'- uCGCCggggGCUGCGGgaGcGGGCCGucacCGACc -3'
miRNA:   3'- uGCGGa---UGGCGCCg-C-CCCGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 188647 0.73 0.297263
Target:  5'- gGCGCCgGCgGCGGCGGcGGcCCGucguccgaccGCGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGCC-CC-GGC----------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 186703 0.67 0.615126
Target:  5'- -gGCCUucguCUGCGGCGGGuUgGGCGAg -3'
miRNA:   3'- ugCGGAu---GGCGCCGCCCcGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 186423 0.67 0.615126
Target:  5'- cACGCCgUGCuCGgcCGGCuGGGCCuccuguacaccGACGACg -3'
miRNA:   3'- -UGCGG-AUG-GC--GCCGcCCCGG-----------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 186339 0.72 0.316722
Target:  5'- gACGCCgucauCCGCGacaacgucuuCGGGGCCGGgGACg -3'
miRNA:   3'- -UGCGGau---GGCGCc---------GCCCCGGCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.