miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 95107 0.66 0.624513
Target:  5'- -aGCUcGgCGaCGGCGGGcccGCCGACGAa -3'
miRNA:   3'- ugCGGaUgGC-GCCGCCC---CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 108176 0.67 0.615126
Target:  5'- gGCGCCUuCUGCGGCGuucaGGG-CGGCcACg -3'
miRNA:   3'- -UGCGGAuGGCGCCGC----CCCgGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 94219 0.66 0.670464
Target:  5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95554 0.66 0.662048
Target:  5'- -aGCUcgGCCGCGGCGaGuccgucggcgccGGCCccGGCGACg -3'
miRNA:   3'- ugCGGa-UGGCGCCGC-C------------CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 199321 0.66 0.652679
Target:  5'- cGCGCUUACCGUuguaGuaGuGGGCCGcgcccACGGCg -3'
miRNA:   3'- -UGCGGAUGGCG----CcgC-CCCGGC-----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 161601 0.66 0.652679
Target:  5'- aACGaCCUGCagaaaGCGGUGuGGGCCcACGuCc -3'
miRNA:   3'- -UGC-GGAUGg----CGCCGC-CCCGGcUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 214315 0.66 0.643296
Target:  5'- -gGCgUGCCGCacgaGCa-GGCCGACGACu -3'
miRNA:   3'- ugCGgAUGGCGc---CGccCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 77086 0.66 0.633905
Target:  5'- cCGCCgucGCCGCGGaccuccgagaCGGaGGCCcGGCGGu -3'
miRNA:   3'- uGCGGa--UGGCGCC----------GCC-CCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 174404 0.66 0.633905
Target:  5'- gGCGCgUucCCGCGGCgccGGGGCCucCGuCg -3'
miRNA:   3'- -UGCGgAu-GGCGCCG---CCCCGGcuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 129845 0.66 0.632966
Target:  5'- cGCGUCUcagcGCC-CGGCGGaggagccccuugaGGCCGcacGCGACg -3'
miRNA:   3'- -UGCGGA----UGGcGCCGCC-------------CCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 101415 0.68 0.559226
Target:  5'- cCGCUUccgagggcacaGCgGCGGcCGGcGGCgCGGCGACg -3'
miRNA:   3'- uGCGGA-----------UGgCGCC-GCC-CCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227599 0.68 0.559226
Target:  5'- cCGCC-ACCcgcaGCGGCcggaGGGCgGGCGGCg -3'
miRNA:   3'- uGCGGaUGG----CGCCGc---CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 157701 0.67 0.609499
Target:  5'- cGCGCCUucGCCuCGGCGGGcugcuacgugaagaaGUCGGCGuCc -3'
miRNA:   3'- -UGCGGA--UGGcGCCGCCC---------------CGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 127273 0.67 0.60575
Target:  5'- gGCGUUcccCCGggcguUGGCGGcGGCCGACGAg -3'
miRNA:   3'- -UGCGGau-GGC-----GCCGCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 210041 0.67 0.59639
Target:  5'- cGCGCCUuCCGCucCGGGGaCGuCGACc -3'
miRNA:   3'- -UGCGGAuGGCGccGCCCCgGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 120256 0.67 0.59639
Target:  5'- -gGCCUAcCCGCGGgacCGccGGCUGAUGACg -3'
miRNA:   3'- ugCGGAU-GGCGCC---GCc-CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 4659 0.67 0.587053
Target:  5'- cGCGCUaACgGCGGCGuuGGGCCuGuuGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGC--CCCGG-CugCUG- -5'
8949 3' -64.4 NC_002512.2 + 222339 0.67 0.58612
Target:  5'- gGCGCCU-CCaggaggaggaggaGCGGCacGGGGCCGccuucccCGGCg -3'
miRNA:   3'- -UGCGGAuGG-------------CGCCG--CCCCGGCu------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 98160 0.67 0.568465
Target:  5'- gGCGgUcGCCGCGGUcuggacGGGCgCGGCGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGc-----CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 124296 0.67 0.568465
Target:  5'- uGCGgCUcgACCGCGcGgagcugauCGGGGCCG-CGGCg -3'
miRNA:   3'- -UGCgGA--UGGCGC-C--------GCCCCGGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.