miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 3' -53.6 NC_002512.2 + 41146 0.66 0.98899
Target:  5'- cCGCaCGGGCCCGgauaCGGAcaggUGUGUAc- -3'
miRNA:   3'- -GUG-GCCCGGGCg---GCCUaa--AUAUAUca -5'
8950 3' -53.6 NC_002512.2 + 153336 0.66 0.98899
Target:  5'- cCGCUGGGCCgGuCCGGGUcggcg-GGUc -3'
miRNA:   3'- -GUGGCCCGGgC-GGCCUAaauauaUCA- -5'
8950 3' -53.6 NC_002512.2 + 72755 0.66 0.98899
Target:  5'- -cCCGGGCCCGCCGc----------- -3'
miRNA:   3'- guGGCCCGGGCGGCcuaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 26321 0.66 0.986622
Target:  5'- uCGCUGGGCCUGUCGGuggcgag-GGa -3'
miRNA:   3'- -GUGGCCCGGGCGGCCuaaauauaUCa -5'
8950 3' -53.6 NC_002512.2 + 32566 0.66 0.985973
Target:  5'- cCGCCGGGCgCCG-CGGGUgccgg-GGUc -3'
miRNA:   3'- -GUGGCCCG-GGCgGCCUAaauauaUCA- -5'
8950 3' -53.6 NC_002512.2 + 25177 0.66 0.985973
Target:  5'- -cCCGGGCCCGCCGu----------- -3'
miRNA:   3'- guGGCCCGGGCGGCcuaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 225798 0.66 0.984246
Target:  5'- gGCCGGGCCgcgggcgGCCGGGUggcc-UGGg -3'
miRNA:   3'- gUGGCCCGGg------CGGCCUAaauauAUCa -5'
8950 3' -53.6 NC_002512.2 + 107209 0.66 0.983511
Target:  5'- aGCCGGGCCgCGgCCGGGgagccgcGGUc -3'
miRNA:   3'- gUGGCCCGG-GC-GGCCUaaauauaUCA- -5'
8950 3' -53.6 NC_002512.2 + 131321 0.66 0.982361
Target:  5'- cCGCCcgaGGcGCCCGCCGGAUc-------- -3'
miRNA:   3'- -GUGG---CC-CGGGCGGCCUAaauauauca -5'
8950 3' -53.6 NC_002512.2 + 108509 0.66 0.982361
Target:  5'- gGCCGGGCCCggcgcccgaccgGCCGGGg--------- -3'
miRNA:   3'- gUGGCCCGGG------------CGGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 23334 0.66 0.980312
Target:  5'- -cCCGGG-CCGCCGGcggUGUAcgAGUg -3'
miRNA:   3'- guGGCCCgGGCGGCCuaaAUAUa-UCA- -5'
8950 3' -53.6 NC_002512.2 + 11667 0.66 0.980312
Target:  5'- gCGCCGcGGCCCGCCGcGGc--------- -3'
miRNA:   3'- -GUGGC-CCGGGCGGC-CUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 226748 0.67 0.978091
Target:  5'- gACCGGGCuCCGgCCGGAc--------- -3'
miRNA:   3'- gUGGCCCG-GGC-GGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 151042 0.67 0.975689
Target:  5'- -cCCGGGUgUGCCGGAcgggggUUUGUaaGUGGUu -3'
miRNA:   3'- guGGCCCGgGCGGCCU------AAAUA--UAUCA- -5'
8950 3' -53.6 NC_002512.2 + 145966 0.67 0.973101
Target:  5'- gCGCCGGGCgCUGCUGGAc--------- -3'
miRNA:   3'- -GUGGCCCG-GGCGGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 30653 0.67 0.967337
Target:  5'- aCAUCGGGCUgCGCCGGAUcUAc----- -3'
miRNA:   3'- -GUGGCCCGG-GCGGCCUAaAUauauca -5'
8950 3' -53.6 NC_002512.2 + 226899 0.68 0.965449
Target:  5'- gACCGGGCCaCGCgGGAggccaaggAGg -3'
miRNA:   3'- gUGGCCCGG-GCGgCCUaaauaua-UCa -5'
8950 3' -53.6 NC_002512.2 + 206997 0.68 0.964149
Target:  5'- -cCCGuGGCCCGCgGGGUcagcAUGGUg -3'
miRNA:   3'- guGGC-CCGGGCGgCCUAaauaUAUCA- -5'
8950 3' -53.6 NC_002512.2 + 145919 0.68 0.964149
Target:  5'- gCGCCGGGCauccgCCGCCGGGa--------- -3'
miRNA:   3'- -GUGGCCCG-----GGCGGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 80658 0.68 0.964149
Target:  5'- gCGCCGGGUCCGUCGGu---------- -3'
miRNA:   3'- -GUGGCCCGGGCGGCCuaaauauauca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.