Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8950 | 3' | -53.6 | NC_002512.2 | + | 225798 | 0.66 | 0.984246 |
Target: 5'- gGCCGGGCCgcgggcgGCCGGGUggcc-UGGg -3' miRNA: 3'- gUGGCCCGGg------CGGCCUAaauauAUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 153336 | 0.66 | 0.98899 |
Target: 5'- cCGCUGGGCCgGuCCGGGUcggcg-GGUc -3' miRNA: 3'- -GUGGCCCGGgC-GGCCUAaauauaUCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 145919 | 0.68 | 0.964149 |
Target: 5'- gCGCCGGGCauccgCCGCCGGGa--------- -3' miRNA: 3'- -GUGGCCCG-----GGCGGCCUaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 206997 | 0.68 | 0.964149 |
Target: 5'- -cCCGuGGCCCGCgGGGUcagcAUGGUg -3' miRNA: 3'- guGGC-CCGGGCGgCCUAaauaUAUCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 145966 | 0.67 | 0.973101 |
Target: 5'- gCGCCGGGCgCUGCUGGAc--------- -3' miRNA: 3'- -GUGGCCCG-GGCGGCCUaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 226748 | 0.67 | 0.978091 |
Target: 5'- gACCGGGCuCCGgCCGGAc--------- -3' miRNA: 3'- gUGGCCCG-GGC-GGCCUaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 115874 | 0.72 | 0.811666 |
Target: 5'- aGgCGGGCCCGCCGGAc--------- -3' miRNA: 3'- gUgGCCCGGGCGGCCUaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 38331 | 0.72 | 0.82869 |
Target: 5'- gACCGGGaCCUGaCCGGAUUaGUGUGu- -3' miRNA: 3'- gUGGCCC-GGGC-GGCCUAAaUAUAUca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 104970 | 0.69 | 0.919996 |
Target: 5'- aCGCCGGGUCCGCCucGAg----GUAGg -3' miRNA: 3'- -GUGGCCCGGGCGGc-CUaaauaUAUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 104019 | 0.69 | 0.922208 |
Target: 5'- aGCCGuGCCCGCCGGAccagagggAGUa -3' miRNA: 3'- gUGGCcCGGGCGGCCUaaauaua-UCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 226899 | 0.68 | 0.965449 |
Target: 5'- gACCGGGCCaCGCgGGAggccaaggAGg -3' miRNA: 3'- gUGGCCCGG-GCGgCCUaaauaua-UCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 107209 | 0.66 | 0.983511 |
Target: 5'- aGCCGGGCCgCGgCCGGGgagccgcGGUc -3' miRNA: 3'- gUGGCCCGG-GC-GGCCUaaauauaUCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 92646 | 0.69 | 0.919996 |
Target: 5'- gCGCCGGGaCCCGCgCGGAUc-------- -3' miRNA: 3'- -GUGGCCC-GGGCG-GCCUAaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 131321 | 0.66 | 0.982361 |
Target: 5'- cCGCCcgaGGcGCCCGCCGGAUc-------- -3' miRNA: 3'- -GUGG---CC-CGGGCGGCCUAaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 189581 | 0.68 | 0.957133 |
Target: 5'- gACCGGG-CCGCCGGGUccucg-GGa -3' miRNA: 3'- gUGGCCCgGGCGGCCUAaauauaUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 227083 | 0.71 | 0.855214 |
Target: 5'- gCGCCGGGuCCCGCCGGccgccggccgGGUc -3' miRNA: 3'- -GUGGCCC-GGGCGGCCuaaauaua--UCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 218680 | 1.08 | 0.008084 |
Target: 5'- aCACCGGGCCCGCCGGAUUUAUAUAGUg -3' miRNA: 3'- -GUGGCCCGGGCGGCCUAAAUAUAUCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 108509 | 0.66 | 0.982361 |
Target: 5'- gGCCGGGCCCggcgcccgaccgGCCGGGg--------- -3' miRNA: 3'- gUGGCCCGGG------------CGGCCUaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 41146 | 0.66 | 0.98899 |
Target: 5'- cCGCaCGGGCCCGgauaCGGAcaggUGUGUAc- -3' miRNA: 3'- -GUG-GCCCGGGCg---GCCUaa--AUAUAUca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 23334 | 0.66 | 0.980312 |
Target: 5'- -cCCGGG-CCGCCGGcggUGUAcgAGUg -3' miRNA: 3'- guGGCCCgGGCGGCCuaaAUAUa-UCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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