miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 3' -53.6 NC_002512.2 + 113163 0.7 0.914302
Target:  5'- aGCCGGGCCaCGUCGGAcgUGccgGGg -3'
miRNA:   3'- gUGGCCCGG-GCGGCCUaaAUauaUCa -5'
8950 3' -53.6 NC_002512.2 + 115523 0.7 0.908375
Target:  5'- gGCCGGGUCCGaaCCGGcUUUA-AUAGUu -3'
miRNA:   3'- gUGGCCCGGGC--GGCCuAAAUaUAUCA- -5'
8950 3' -53.6 NC_002512.2 + 115702 0.69 0.945382
Target:  5'- cCGCCGGGCCCgacGCCGGcgccaccgAGg -3'
miRNA:   3'- -GUGGCCCGGG---CGGCCuaaauauaUCa -5'
8950 3' -53.6 NC_002512.2 + 115874 0.72 0.811666
Target:  5'- aGgCGGGCCCGCCGGAc--------- -3'
miRNA:   3'- gUgGCCCGGGCGGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 118166 0.68 0.949233
Target:  5'- gACCGuGCCCGCCGGAg--------- -3'
miRNA:   3'- gUGGCcCGGGCGGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 128832 0.74 0.737837
Target:  5'- aCGCCGGGUUCGCCGGGgagGUGa--- -3'
miRNA:   3'- -GUGGCCCGGGCGGCCUaaaUAUauca -5'
8950 3' -53.6 NC_002512.2 + 131321 0.66 0.982361
Target:  5'- cCGCCcgaGGcGCCCGCCGGAUc-------- -3'
miRNA:   3'- -GUGG---CC-CGGGCGGCCUAaauauauca -5'
8950 3' -53.6 NC_002512.2 + 145919 0.68 0.964149
Target:  5'- gCGCCGGGCauccgCCGCCGGGa--------- -3'
miRNA:   3'- -GUGGCCCG-----GGCGGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 145966 0.67 0.973101
Target:  5'- gCGCCGGGCgCUGCUGGAc--------- -3'
miRNA:   3'- -GUGGCCCG-GGCGGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 151042 0.67 0.975689
Target:  5'- -cCCGGGUgUGCCGGAcgggggUUUGUaaGUGGUu -3'
miRNA:   3'- guGGCCCGgGCGGCCU------AAAUA--UAUCA- -5'
8950 3' -53.6 NC_002512.2 + 153336 0.66 0.98899
Target:  5'- cCGCUGGGCCgGuCCGGGUcggcg-GGUc -3'
miRNA:   3'- -GUGGCCCGGgC-GGCCUAaauauaUCA- -5'
8950 3' -53.6 NC_002512.2 + 189581 0.68 0.957133
Target:  5'- gACCGGG-CCGCCGGGUccucg-GGa -3'
miRNA:   3'- gUGGCCCgGGCGGCCUAaauauaUCa -5'
8950 3' -53.6 NC_002512.2 + 206997 0.68 0.964149
Target:  5'- -cCCGuGGCCCGCgGGGUcagcAUGGUg -3'
miRNA:   3'- guGGC-CCGGGCGgCCUAaauaUAUCA- -5'
8950 3' -53.6 NC_002512.2 + 218680 1.08 0.008084
Target:  5'- aCACCGGGCCCGCCGGAUUUAUAUAGUg -3'
miRNA:   3'- -GUGGCCCGGGCGGCCUAAAUAUAUCA- -5'
8950 3' -53.6 NC_002512.2 + 225798 0.66 0.984246
Target:  5'- gGCCGGGCCgcgggcgGCCGGGUggcc-UGGg -3'
miRNA:   3'- gUGGCCCGGg------CGGCCUAaauauAUCa -5'
8950 3' -53.6 NC_002512.2 + 226748 0.67 0.978091
Target:  5'- gACCGGGCuCCGgCCGGAc--------- -3'
miRNA:   3'- gUGGCCCG-GGC-GGCCUaaauauauca -5'
8950 3' -53.6 NC_002512.2 + 226899 0.68 0.965449
Target:  5'- gACCGGGCCaCGCgGGAggccaaggAGg -3'
miRNA:   3'- gUGGCCCGG-GCGgCCUaaauaua-UCa -5'
8950 3' -53.6 NC_002512.2 + 227083 0.71 0.855214
Target:  5'- gCGCCGGGuCCCGCCGGccgccggccgGGUc -3'
miRNA:   3'- -GUGGCCC-GGGCGGCCuaaauaua--UCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.