Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8951 | 3' | -53 | NC_002512.2 | + | 176686 | 0.66 | 0.990089 |
Target: 5'- aCUgGcgCGUCGCCUUGUGGUGu--- -3' miRNA: 3'- gGAgCaaGCGGUGGAGCACCAUcuug -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 156992 | 0.66 | 0.99128 |
Target: 5'- aCUUCGgcCGCCGCUUCG-GGcccGAGCc -3' miRNA: 3'- -GGAGCaaGCGGUGGAGCaCCau-CUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 202139 | 0.66 | 0.99128 |
Target: 5'- gUCUCGgcCGCCGCCgCG-GGgcGggUg -3' miRNA: 3'- -GGAGCaaGCGGUGGaGCaCCauCuuG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 195440 | 0.66 | 0.992355 |
Target: 5'- gUUCGgggUCGUCAgCUgGUGGUucgugaAGAACg -3' miRNA: 3'- gGAGCa--AGCGGUgGAgCACCA------UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 195821 | 0.66 | 0.992355 |
Target: 5'- -aUCGUcgaCGCCGCCgUCGUGGggcacgccucGAGCa -3' miRNA: 3'- ggAGCAa--GCGGUGG-AGCACCau--------CUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 118275 | 0.66 | 0.992355 |
Target: 5'- gCCUCGcUgGCCGcCCUCGUccGGaGGAAg -3' miRNA: 3'- -GGAGCaAgCGGU-GGAGCA--CCaUCUUg -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 198529 | 0.66 | 0.994188 |
Target: 5'- cCUUCGaUCuCCAgCUCGUGGUcguagccggccAGGGCg -3' miRNA: 3'- -GGAGCaAGcGGUgGAGCACCA-----------UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 41385 | 0.66 | 0.994188 |
Target: 5'- gCUCGUagGaCACCUCGUugcgGGU-GAACg -3' miRNA: 3'- gGAGCAagCgGUGGAGCA----CCAuCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 8086 | 0.66 | 0.994188 |
Target: 5'- uCCUCGaacUCGUCGCCg---GcGUAGAGCa -3' miRNA: 3'- -GGAGCa--AGCGGUGGagcaC-CAUCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 202101 | 0.66 | 0.994188 |
Target: 5'- aCCUCGUccgacCGCguCCUCGUcagcuGGUGGcGCc -3' miRNA: 3'- -GGAGCAa----GCGguGGAGCA-----CCAUCuUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 103227 | 0.66 | 0.994188 |
Target: 5'- gCUCGcgUCGCCGCC-CGUcgacggccgcGGcgAGGGCa -3' miRNA: 3'- gGAGCa-AGCGGUGGaGCA----------CCa-UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 73951 | 0.66 | 0.994961 |
Target: 5'- uCCUCG-UCGCCGCUgcuccCGaagcUGG-AGGACg -3' miRNA: 3'- -GGAGCaAGCGGUGGa----GC----ACCaUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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