miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 113894 0.69 0.963947
Target:  5'- gCCUCGUucaUCGUCcgggggACCUCGcgccgcaccUGGUAGAAg -3'
miRNA:   3'- -GGAGCA---AGCGG------UGGAGC---------ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 78847 0.69 0.963947
Target:  5'- aCCgCGUgacgggcCGCCGCCUCGaGGUGGcuCg -3'
miRNA:   3'- -GGaGCAa------GCGGUGGAGCaCCAUCuuG- -5'
8951 3' -53 NC_002512.2 + 25271 0.69 0.963947
Target:  5'- cCUUCGUcgUCGuCCuccuCCUCGcUGGUGGAGu -3'
miRNA:   3'- -GGAGCA--AGC-GGu---GGAGC-ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 94024 0.69 0.966191
Target:  5'- gCCUCGUcCGCCAgcuCCUCGgcGGUgacggcgaccgggaAGGGCg -3'
miRNA:   3'- -GGAGCAaGCGGU---GGAGCa-CCA--------------UCUUG- -5'
8951 3' -53 NC_002512.2 + 119764 0.68 0.970093
Target:  5'- aUCUCGUUCugguCCggggUGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGcgguGGa---GCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 215567 0.68 0.972867
Target:  5'- gCCUCGgcgUCGUCuacGCCUacaaccCGUGGgAGGACa -3'
miRNA:   3'- -GGAGCa--AGCGG---UGGA------GCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 183968 0.68 0.975451
Target:  5'- gCUCGggcgUCGUCGCCugUCG-GGgcGGACa -3'
miRNA:   3'- gGAGCa---AGCGGUGG--AGCaCCauCUUG- -5'
8951 3' -53 NC_002512.2 + 46512 0.68 0.975451
Target:  5'- -aUCGgUCGCCugCUCGUauucGGUAuauGGACg -3'
miRNA:   3'- ggAGCaAGCGGugGAGCA----CCAU---CUUG- -5'
8951 3' -53 NC_002512.2 + 89551 0.68 0.976432
Target:  5'- aCUCGUgcagCGCgGugaaguaguccuugaCCUCGcGGUGGGACa -3'
miRNA:   3'- gGAGCAa---GCGgU---------------GGAGCaCCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 132145 0.68 0.977849
Target:  5'- --aCGacCGCCACCUCGaGGUcgguGAGCg -3'
miRNA:   3'- ggaGCaaGCGGUGGAGCaCCAu---CUUG- -5'
8951 3' -53 NC_002512.2 + 62070 0.68 0.977849
Target:  5'- uCCUCG---GCCACCUCGUaGUugGGGGCc -3'
miRNA:   3'- -GGAGCaagCGGUGGAGCAcCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 1685 0.67 0.982122
Target:  5'- gCCUCGacCGCgGCCUCGaaGUAGGu- -3'
miRNA:   3'- -GGAGCaaGCGgUGGAGCacCAUCUug -5'
8951 3' -53 NC_002512.2 + 184433 0.67 0.982122
Target:  5'- gCCUCGgcCGCCGCCggCGUcGGacagGGAGu -3'
miRNA:   3'- -GGAGCaaGCGGUGGa-GCA-CCa---UCUUg -5'
8951 3' -53 NC_002512.2 + 108419 0.67 0.98401
Target:  5'- gCUCGUcugCGCCGCC-CG-GGgccgGGGGCc -3'
miRNA:   3'- gGAGCAa--GCGGUGGaGCaCCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 75633 0.67 0.98401
Target:  5'- cCCUC---CGCCGCUcCGUGG-AGAACc -3'
miRNA:   3'- -GGAGcaaGCGGUGGaGCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 117741 0.67 0.985577
Target:  5'- gCUCGccgUCGaCCGCCUCGUcuucgcgccaugcGGgAGGGCg -3'
miRNA:   3'- gGAGCa--AGC-GGUGGAGCA-------------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 101771 0.67 0.985743
Target:  5'- cCUUCGgcgagacggCGCCGuCCUCGcGGcGGAGCg -3'
miRNA:   3'- -GGAGCaa-------GCGGU-GGAGCaCCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 29684 0.67 0.987177
Target:  5'- uCCUCGggcUCGUCGCgCUCGUccgucucGGaGGAGCc -3'
miRNA:   3'- -GGAGCa--AGCGGUG-GAGCA-------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 139118 0.67 0.987329
Target:  5'- aCCUCGUUgGCCAagaagcgcuUCUCGgccgGGUcguucgccaAGGACu -3'
miRNA:   3'- -GGAGCAAgCGGU---------GGAGCa---CCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 125369 0.67 0.988775
Target:  5'- uCCUUGUUCuCCACCgCGUagcGGcccUGGAACa -3'
miRNA:   3'- -GGAGCAAGcGGUGGaGCA---CC---AUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.