miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 101771 0.67 0.985743
Target:  5'- cCUUCGgcgagacggCGCCGuCCUCGcGGcGGAGCg -3'
miRNA:   3'- -GGAGCaa-------GCGGU-GGAGCaCCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 103227 0.66 0.994188
Target:  5'- gCUCGcgUCGCCGCC-CGUcgacggccgcGGcgAGGGCa -3'
miRNA:   3'- gGAGCa-AGCGGUGGaGCA----------CCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 106348 0.7 0.935663
Target:  5'- gCUCGUcccgcgagcUCGCCACCUCGcggcccgucaGGUGuuGAACa -3'
miRNA:   3'- gGAGCA---------AGCGGUGGAGCa---------CCAU--CUUG- -5'
8951 3' -53 NC_002512.2 + 108419 0.67 0.98401
Target:  5'- gCUCGUcugCGCCGCC-CG-GGgccgGGGGCc -3'
miRNA:   3'- gGAGCAa--GCGGUGGaGCaCCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 113894 0.69 0.963947
Target:  5'- gCCUCGUucaUCGUCcgggggACCUCGcgccgcaccUGGUAGAAg -3'
miRNA:   3'- -GGAGCA---AGCGG------UGGAGC---------ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 117741 0.67 0.985577
Target:  5'- gCUCGccgUCGaCCGCCUCGUcuucgcgccaugcGGgAGGGCg -3'
miRNA:   3'- gGAGCa--AGC-GGUGGAGCA-------------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 118275 0.66 0.992355
Target:  5'- gCCUCGcUgGCCGcCCUCGUccGGaGGAAg -3'
miRNA:   3'- -GGAGCaAgCGGU-GGAGCA--CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 119764 0.68 0.970093
Target:  5'- aUCUCGUUCugguCCggggUGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGcgguGGa---GCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 125369 0.67 0.988775
Target:  5'- uCCUUGUUCuCCACCgCGUagcGGcccUGGAACa -3'
miRNA:   3'- -GGAGCAAGcGGUGGaGCA---CC---AUCUUG- -5'
8951 3' -53 NC_002512.2 + 127483 0.69 0.960565
Target:  5'- gUUCGUggcCGCCGcCCUCG-GGcgGGAGCa -3'
miRNA:   3'- gGAGCAa--GCGGU-GGAGCaCCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 132145 0.68 0.977849
Target:  5'- --aCGacCGCCACCUCGaGGUcgguGAGCg -3'
miRNA:   3'- ggaGCaaGCGGUGGAGCaCCAu---CUUG- -5'
8951 3' -53 NC_002512.2 + 133625 0.69 0.956969
Target:  5'- gCUCGaUCGUCGCCUCGUcccuGGcGGAGu -3'
miRNA:   3'- gGAGCaAGCGGUGGAGCA----CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 139118 0.67 0.987329
Target:  5'- aCCUCGUUgGCCAagaagcgcuUCUCGgccgGGUcguucgccaAGGACu -3'
miRNA:   3'- -GGAGCAAgCGGU---------GGAGCa---CCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 140838 0.79 0.531545
Target:  5'- uCCUCGUUCGCCACCgacgagauccUCGUGG-AGuucGCu -3'
miRNA:   3'- -GGAGCAAGCGGUGG----------AGCACCaUCu--UG- -5'
8951 3' -53 NC_002512.2 + 148080 0.7 0.949122
Target:  5'- aCCUCGcggcgCGUCGgcCCUCGUGGcUAGAGu -3'
miRNA:   3'- -GGAGCaa---GCGGU--GGAGCACC-AUCUUg -5'
8951 3' -53 NC_002512.2 + 154620 0.72 0.861344
Target:  5'- gCCgccgUCGCCGCCaUCGUGGggacGGGACg -3'
miRNA:   3'- -GGagcaAGCGGUGG-AGCACCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 156992 0.66 0.99128
Target:  5'- aCUUCGgcCGCCGCUUCG-GGcccGAGCc -3'
miRNA:   3'- -GGAGCaaGCGGUGGAGCaCCau-CUUG- -5'
8951 3' -53 NC_002512.2 + 158176 0.7 0.940377
Target:  5'- cCCUCGggaCGCgG-CUCGUGGUgcAGAACc -3'
miRNA:   3'- -GGAGCaa-GCGgUgGAGCACCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 172933 0.79 0.521859
Target:  5'- gCUCGccaccUUCGCCGCCUCGgUGGUgcuccGGAACg -3'
miRNA:   3'- gGAGC-----AAGCGGUGGAGC-ACCA-----UCUUG- -5'
8951 3' -53 NC_002512.2 + 176686 0.66 0.990089
Target:  5'- aCUgGcgCGUCGCCUUGUGGUGu--- -3'
miRNA:   3'- gGAgCaaGCGGUGGAGCACCAUcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.