miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 1685 0.67 0.982122
Target:  5'- gCCUCGacCGCgGCCUCGaaGUAGGu- -3'
miRNA:   3'- -GGAGCaaGCGgUGGAGCacCAUCUug -5'
8951 3' -53 NC_002512.2 + 2668 0.71 0.920135
Target:  5'- gCCUCccgGUcCGCCGCCUCcUGGUccgcgcgcgGGAGCg -3'
miRNA:   3'- -GGAG---CAaGCGGUGGAGcACCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 2797 0.69 0.963947
Target:  5'- gCCUCGUUCGCCccACCU-GUGucuccaGUAGAc- -3'
miRNA:   3'- -GGAGCAAGCGG--UGGAgCAC------CAUCUug -5'
8951 3' -53 NC_002512.2 + 8086 0.66 0.994188
Target:  5'- uCCUCGaacUCGUCGCCg---GcGUAGAGCa -3'
miRNA:   3'- -GGAGCa--AGCGGUGGagcaC-CAUCUUG- -5'
8951 3' -53 NC_002512.2 + 19745 0.7 0.935663
Target:  5'- --aCGUUgGCCAgCCa-GUGGUAGAACu -3'
miRNA:   3'- ggaGCAAgCGGU-GGagCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 25271 0.69 0.963947
Target:  5'- cCUUCGUcgUCGuCCuccuCCUCGcUGGUGGAGu -3'
miRNA:   3'- -GGAGCA--AGC-GGu---GGAGC-ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 29684 0.67 0.987177
Target:  5'- uCCUCGggcUCGUCGCgCUCGUccgucucGGaGGAGCc -3'
miRNA:   3'- -GGAGCa--AGCGGUG-GAGCA-------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 33356 0.76 0.691123
Target:  5'- gCUCG-UCGUCacGCCUCGUGG-AGAACu -3'
miRNA:   3'- gGAGCaAGCGG--UGGAGCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 33719 0.7 0.944863
Target:  5'- cCCUCGggcUCGCC-CCUCGUcGaccGGAGCg -3'
miRNA:   3'- -GGAGCa--AGCGGuGGAGCAcCa--UCUUG- -5'
8951 3' -53 NC_002512.2 + 41385 0.66 0.994188
Target:  5'- gCUCGUagGaCACCUCGUugcgGGU-GAACg -3'
miRNA:   3'- gGAGCAagCgGUGGAGCA----CCAuCUUG- -5'
8951 3' -53 NC_002512.2 + 46512 0.68 0.975451
Target:  5'- -aUCGgUCGCCugCUCGUauucGGUAuauGGACg -3'
miRNA:   3'- ggAGCaAGCGGugGAGCA----CCAU---CUUG- -5'
8951 3' -53 NC_002512.2 + 47714 0.7 0.944863
Target:  5'- uCCU-GcgCGCCGCCUCGcGGgaggAGGGCu -3'
miRNA:   3'- -GGAgCaaGCGGUGGAGCaCCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 62070 0.68 0.977849
Target:  5'- uCCUCG---GCCACCUCGUaGUugGGGGCc -3'
miRNA:   3'- -GGAGCaagCGGUGGAGCAcCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 73951 0.66 0.994961
Target:  5'- uCCUCG-UCGCCGCUgcuccCGaagcUGG-AGGACg -3'
miRNA:   3'- -GGAGCaAGCGGUGGa----GC----ACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 75633 0.67 0.98401
Target:  5'- cCCUC---CGCCGCUcCGUGG-AGAACc -3'
miRNA:   3'- -GGAGcaaGCGGUGGaGCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 78847 0.69 0.963947
Target:  5'- aCCgCGUgacgggcCGCCGCCUCGaGGUGGcuCg -3'
miRNA:   3'- -GGaGCAa------GCGGUGGAGCaCCAUCuuG- -5'
8951 3' -53 NC_002512.2 + 86626 0.71 0.914497
Target:  5'- uCCUCGUccUCGUCGgCgcggUGUGGUGGAucGCg -3'
miRNA:   3'- -GGAGCA--AGCGGUgGa---GCACCAUCU--UG- -5'
8951 3' -53 NC_002512.2 + 89551 0.68 0.976432
Target:  5'- aCUCGUgcagCGCgGugaaguaguccuugaCCUCGcGGUGGGACa -3'
miRNA:   3'- gGAGCAa---GCGgU---------------GGAGCaCCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 90935 0.74 0.804342
Target:  5'- gCCggcgCGgcCGCCGCCgUCGUGGUGGugguGCu -3'
miRNA:   3'- -GGa---GCaaGCGGUGG-AGCACCAUCu---UG- -5'
8951 3' -53 NC_002512.2 + 94024 0.69 0.966191
Target:  5'- gCCUCGUcCGCCAgcuCCUCGgcGGUgacggcgaccgggaAGGGCg -3'
miRNA:   3'- -GGAGCAaGCGGU---GGAGCa-CCA--------------UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.