miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 223254 0.69 0.963947
Target:  5'- uCCUCGggCGuCCGCgUCGUcGGggggcGGGACg -3'
miRNA:   3'- -GGAGCaaGC-GGUGgAGCA-CCa----UCUUG- -5'
8951 3' -53 NC_002512.2 + 216622 1.13 0.005345
Target:  5'- aCCUCGUUCGCCACCUCGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGCGGUGGAGCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 215567 0.68 0.972867
Target:  5'- gCCUCGgcgUCGUCuacGCCUacaaccCGUGGgAGGACa -3'
miRNA:   3'- -GGAGCa--AGCGG---UGGA------GCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 206536 0.71 0.920135
Target:  5'- aCCUCGUgcUCGCCGCaCUCGUacaccgccggcGGcccGGGGCg -3'
miRNA:   3'- -GGAGCA--AGCGGUG-GAGCA-----------CCa--UCUUG- -5'
8951 3' -53 NC_002512.2 + 202139 0.66 0.99128
Target:  5'- gUCUCGgcCGCCGCCgCG-GGgcGggUg -3'
miRNA:   3'- -GGAGCaaGCGGUGGaGCaCCauCuuG- -5'
8951 3' -53 NC_002512.2 + 202101 0.66 0.994188
Target:  5'- aCCUCGUccgacCGCguCCUCGUcagcuGGUGGcGCc -3'
miRNA:   3'- -GGAGCAa----GCGguGGAGCA-----CCAUCuUG- -5'
8951 3' -53 NC_002512.2 + 200152 0.75 0.739991
Target:  5'- cCCUCGcgCGCCGCCac--GGUAGGGCg -3'
miRNA:   3'- -GGAGCaaGCGGUGGagcaCCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 198529 0.66 0.994188
Target:  5'- cCUUCGaUCuCCAgCUCGUGGUcguagccggccAGGGCg -3'
miRNA:   3'- -GGAGCaAGcGGUgGAGCACCA-----------UCUUG- -5'
8951 3' -53 NC_002512.2 + 195821 0.66 0.992355
Target:  5'- -aUCGUcgaCGCCGCCgUCGUGGggcacgccucGAGCa -3'
miRNA:   3'- ggAGCAa--GCGGUGG-AGCACCau--------CUUG- -5'
8951 3' -53 NC_002512.2 + 195440 0.66 0.992355
Target:  5'- gUUCGgggUCGUCAgCUgGUGGUucgugaAGAACg -3'
miRNA:   3'- gGAGCa--AGCGGUgGAgCACCA------UCUUG- -5'
8951 3' -53 NC_002512.2 + 184433 0.67 0.982122
Target:  5'- gCCUCGgcCGCCGCCggCGUcGGacagGGAGu -3'
miRNA:   3'- -GGAGCaaGCGGUGGa-GCA-CCa---UCUUg -5'
8951 3' -53 NC_002512.2 + 183968 0.68 0.975451
Target:  5'- gCUCGggcgUCGUCGCCugUCG-GGgcGGACa -3'
miRNA:   3'- gGAGCa---AGCGGUGG--AGCaCCauCUUG- -5'
8951 3' -53 NC_002512.2 + 176686 0.66 0.990089
Target:  5'- aCUgGcgCGUCGCCUUGUGGUGu--- -3'
miRNA:   3'- gGAgCaaGCGGUGGAGCACCAUcuug -5'
8951 3' -53 NC_002512.2 + 172933 0.79 0.521859
Target:  5'- gCUCGccaccUUCGCCGCCUCGgUGGUgcuccGGAACg -3'
miRNA:   3'- gGAGC-----AAGCGGUGGAGC-ACCA-----UCUUG- -5'
8951 3' -53 NC_002512.2 + 158176 0.7 0.940377
Target:  5'- cCCUCGggaCGCgG-CUCGUGGUgcAGAACc -3'
miRNA:   3'- -GGAGCaa-GCGgUgGAGCACCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 156992 0.66 0.99128
Target:  5'- aCUUCGgcCGCCGCUUCG-GGcccGAGCc -3'
miRNA:   3'- -GGAGCaaGCGGUGGAGCaCCau-CUUG- -5'
8951 3' -53 NC_002512.2 + 154620 0.72 0.861344
Target:  5'- gCCgccgUCGCCGCCaUCGUGGggacGGGACg -3'
miRNA:   3'- -GGagcaAGCGGUGG-AGCACCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 148080 0.7 0.949122
Target:  5'- aCCUCGcggcgCGUCGgcCCUCGUGGcUAGAGu -3'
miRNA:   3'- -GGAGCaa---GCGGU--GGAGCACC-AUCUUg -5'
8951 3' -53 NC_002512.2 + 140838 0.79 0.531545
Target:  5'- uCCUCGUUCGCCACCgacgagauccUCGUGG-AGuucGCu -3'
miRNA:   3'- -GGAGCAAGCGGUGG----------AGCACCaUCu--UG- -5'
8951 3' -53 NC_002512.2 + 139118 0.67 0.987329
Target:  5'- aCCUCGUUgGCCAagaagcgcuUCUCGgccgGGUcguucgccaAGGACu -3'
miRNA:   3'- -GGAGCAAgCGGU---------GGAGCa---CCA---------UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.