miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 216622 1.13 0.005345
Target:  5'- aCCUCGUUCGCCACCUCGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGCGGUGGAGCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 172933 0.79 0.521859
Target:  5'- gCUCGccaccUUCGCCGCCUCGgUGGUgcuccGGAACg -3'
miRNA:   3'- gGAGC-----AAGCGGUGGAGC-ACCA-----UCUUG- -5'
8951 3' -53 NC_002512.2 + 140838 0.79 0.531545
Target:  5'- uCCUCGUUCGCCACCgacgagauccUCGUGG-AGuucGCu -3'
miRNA:   3'- -GGAGCAAGCGGUGG----------AGCACCaUCu--UG- -5'
8951 3' -53 NC_002512.2 + 33356 0.76 0.691123
Target:  5'- gCUCG-UCGUCacGCCUCGUGG-AGAACu -3'
miRNA:   3'- gGAGCaAGCGG--UGGAGCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 200152 0.75 0.739991
Target:  5'- cCCUCGcgCGCCGCCac--GGUAGGGCg -3'
miRNA:   3'- -GGAGCaaGCGGUGGagcaCCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 90935 0.74 0.804342
Target:  5'- gCCggcgCGgcCGCCGCCgUCGUGGUGGugguGCu -3'
miRNA:   3'- -GGa---GCaaGCGGUGG-AGCACCAUCu---UG- -5'
8951 3' -53 NC_002512.2 + 154620 0.72 0.861344
Target:  5'- gCCgccgUCGCCGCCaUCGUGGggacGGGACg -3'
miRNA:   3'- -GGagcaAGCGGUGG-AGCACCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 86626 0.71 0.914497
Target:  5'- uCCUCGUccUCGUCGgCgcggUGUGGUGGAucGCg -3'
miRNA:   3'- -GGAGCA--AGCGGUgGa---GCACCAUCU--UG- -5'
8951 3' -53 NC_002512.2 + 2668 0.71 0.920135
Target:  5'- gCCUCccgGUcCGCCGCCUCcUGGUccgcgcgcgGGAGCg -3'
miRNA:   3'- -GGAG---CAaGCGGUGGAGcACCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 206536 0.71 0.920135
Target:  5'- aCCUCGUgcUCGCCGCaCUCGUacaccgccggcGGcccGGGGCg -3'
miRNA:   3'- -GGAGCA--AGCGGUG-GAGCA-----------CCa--UCUUG- -5'
8951 3' -53 NC_002512.2 + 106348 0.7 0.935663
Target:  5'- gCUCGUcccgcgagcUCGCCACCUCGcggcccgucaGGUGuuGAACa -3'
miRNA:   3'- gGAGCA---------AGCGGUGGAGCa---------CCAU--CUUG- -5'
8951 3' -53 NC_002512.2 + 19745 0.7 0.935663
Target:  5'- --aCGUUgGCCAgCCa-GUGGUAGAACu -3'
miRNA:   3'- ggaGCAAgCGGU-GGagCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 158176 0.7 0.940377
Target:  5'- cCCUCGggaCGCgG-CUCGUGGUgcAGAACc -3'
miRNA:   3'- -GGAGCaa-GCGgUgGAGCACCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 33719 0.7 0.944863
Target:  5'- cCCUCGggcUCGCC-CCUCGUcGaccGGAGCg -3'
miRNA:   3'- -GGAGCa--AGCGGuGGAGCAcCa--UCUUG- -5'
8951 3' -53 NC_002512.2 + 47714 0.7 0.944863
Target:  5'- uCCU-GcgCGCCGCCUCGcGGgaggAGGGCu -3'
miRNA:   3'- -GGAgCaaGCGGUGGAGCaCCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 148080 0.7 0.949122
Target:  5'- aCCUCGcggcgCGUCGgcCCUCGUGGcUAGAGu -3'
miRNA:   3'- -GGAGCaa---GCGGU--GGAGCACC-AUCUUg -5'
8951 3' -53 NC_002512.2 + 133625 0.69 0.956969
Target:  5'- gCUCGaUCGUCGCCUCGUcccuGGcGGAGu -3'
miRNA:   3'- gGAGCaAGCGGUGGAGCA----CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 127483 0.69 0.960565
Target:  5'- gUUCGUggcCGCCGcCCUCG-GGcgGGAGCa -3'
miRNA:   3'- gGAGCAa--GCGGU-GGAGCaCCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 223254 0.69 0.963947
Target:  5'- uCCUCGggCGuCCGCgUCGUcGGggggcGGGACg -3'
miRNA:   3'- -GGAGCaaGC-GGUGgAGCA-CCa----UCUUG- -5'
8951 3' -53 NC_002512.2 + 78847 0.69 0.963947
Target:  5'- aCCgCGUgacgggcCGCCGCCUCGaGGUGGcuCg -3'
miRNA:   3'- -GGaGCAa------GCGGUGGAGCaCCAUCuuG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.