Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8951 | 3' | -53 | NC_002512.2 | + | 216622 | 1.13 | 0.005345 |
Target: 5'- aCCUCGUUCGCCACCUCGUGGUAGAACa -3' miRNA: 3'- -GGAGCAAGCGGUGGAGCACCAUCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 172933 | 0.79 | 0.521859 |
Target: 5'- gCUCGccaccUUCGCCGCCUCGgUGGUgcuccGGAACg -3' miRNA: 3'- gGAGC-----AAGCGGUGGAGC-ACCA-----UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 140838 | 0.79 | 0.531545 |
Target: 5'- uCCUCGUUCGCCACCgacgagauccUCGUGG-AGuucGCu -3' miRNA: 3'- -GGAGCAAGCGGUGG----------AGCACCaUCu--UG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 33356 | 0.76 | 0.691123 |
Target: 5'- gCUCG-UCGUCacGCCUCGUGG-AGAACu -3' miRNA: 3'- gGAGCaAGCGG--UGGAGCACCaUCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 200152 | 0.75 | 0.739991 |
Target: 5'- cCCUCGcgCGCCGCCac--GGUAGGGCg -3' miRNA: 3'- -GGAGCaaGCGGUGGagcaCCAUCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 90935 | 0.74 | 0.804342 |
Target: 5'- gCCggcgCGgcCGCCGCCgUCGUGGUGGugguGCu -3' miRNA: 3'- -GGa---GCaaGCGGUGG-AGCACCAUCu---UG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 154620 | 0.72 | 0.861344 |
Target: 5'- gCCgccgUCGCCGCCaUCGUGGggacGGGACg -3' miRNA: 3'- -GGagcaAGCGGUGG-AGCACCa---UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 86626 | 0.71 | 0.914497 |
Target: 5'- uCCUCGUccUCGUCGgCgcggUGUGGUGGAucGCg -3' miRNA: 3'- -GGAGCA--AGCGGUgGa---GCACCAUCU--UG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 2668 | 0.71 | 0.920135 |
Target: 5'- gCCUCccgGUcCGCCGCCUCcUGGUccgcgcgcgGGAGCg -3' miRNA: 3'- -GGAG---CAaGCGGUGGAGcACCA---------UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 206536 | 0.71 | 0.920135 |
Target: 5'- aCCUCGUgcUCGCCGCaCUCGUacaccgccggcGGcccGGGGCg -3' miRNA: 3'- -GGAGCA--AGCGGUG-GAGCA-----------CCa--UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 106348 | 0.7 | 0.935663 |
Target: 5'- gCUCGUcccgcgagcUCGCCACCUCGcggcccgucaGGUGuuGAACa -3' miRNA: 3'- gGAGCA---------AGCGGUGGAGCa---------CCAU--CUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 19745 | 0.7 | 0.935663 |
Target: 5'- --aCGUUgGCCAgCCa-GUGGUAGAACu -3' miRNA: 3'- ggaGCAAgCGGU-GGagCACCAUCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 158176 | 0.7 | 0.940377 |
Target: 5'- cCCUCGggaCGCgG-CUCGUGGUgcAGAACc -3' miRNA: 3'- -GGAGCaa-GCGgUgGAGCACCA--UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 33719 | 0.7 | 0.944863 |
Target: 5'- cCCUCGggcUCGCC-CCUCGUcGaccGGAGCg -3' miRNA: 3'- -GGAGCa--AGCGGuGGAGCAcCa--UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 47714 | 0.7 | 0.944863 |
Target: 5'- uCCU-GcgCGCCGCCUCGcGGgaggAGGGCu -3' miRNA: 3'- -GGAgCaaGCGGUGGAGCaCCa---UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 148080 | 0.7 | 0.949122 |
Target: 5'- aCCUCGcggcgCGUCGgcCCUCGUGGcUAGAGu -3' miRNA: 3'- -GGAGCaa---GCGGU--GGAGCACC-AUCUUg -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 133625 | 0.69 | 0.956969 |
Target: 5'- gCUCGaUCGUCGCCUCGUcccuGGcGGAGu -3' miRNA: 3'- gGAGCaAGCGGUGGAGCA----CCaUCUUg -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 127483 | 0.69 | 0.960565 |
Target: 5'- gUUCGUggcCGCCGcCCUCG-GGcgGGAGCa -3' miRNA: 3'- gGAGCAa--GCGGU-GGAGCaCCa-UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 223254 | 0.69 | 0.963947 |
Target: 5'- uCCUCGggCGuCCGCgUCGUcGGggggcGGGACg -3' miRNA: 3'- -GGAGCaaGC-GGUGgAGCA-CCa----UCUUG- -5' |
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8951 | 3' | -53 | NC_002512.2 | + | 78847 | 0.69 | 0.963947 |
Target: 5'- aCCgCGUgacgggcCGCCGCCUCGaGGUGGcuCg -3' miRNA: 3'- -GGaGCAa------GCGGUGGAGCaCCAUCuuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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