miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 139118 0.67 0.987329
Target:  5'- aCCUCGUUgGCCAagaagcgcuUCUCGgccgGGUcguucgccaAGGACu -3'
miRNA:   3'- -GGAGCAAgCGGU---------GGAGCa---CCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 25271 0.69 0.963947
Target:  5'- cCUUCGUcgUCGuCCuccuCCUCGcUGGUGGAGu -3'
miRNA:   3'- -GGAGCA--AGC-GGu---GGAGC-ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 78847 0.69 0.963947
Target:  5'- aCCgCGUgacgggcCGCCGCCUCGaGGUGGcuCg -3'
miRNA:   3'- -GGaGCAa------GCGGUGGAGCaCCAUCuuG- -5'
8951 3' -53 NC_002512.2 + 113894 0.69 0.963947
Target:  5'- gCCUCGUucaUCGUCcgggggACCUCGcgccgcaccUGGUAGAAg -3'
miRNA:   3'- -GGAGCA---AGCGG------UGGAGC---------ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 119764 0.68 0.970093
Target:  5'- aUCUCGUUCugguCCggggUGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGcgguGGa---GCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 62070 0.68 0.977849
Target:  5'- uCCUCG---GCCACCUCGUaGUugGGGGCc -3'
miRNA:   3'- -GGAGCaagCGGUGGAGCAcCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 1685 0.67 0.982122
Target:  5'- gCCUCGacCGCgGCCUCGaaGUAGGu- -3'
miRNA:   3'- -GGAGCaaGCGgUGGAGCacCAUCUug -5'
8951 3' -53 NC_002512.2 + 117741 0.67 0.985577
Target:  5'- gCUCGccgUCGaCCGCCUCGUcuucgcgccaugcGGgAGGGCg -3'
miRNA:   3'- gGAGCa--AGC-GGUGGAGCA-------------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 29684 0.67 0.987177
Target:  5'- uCCUCGggcUCGUCGCgCUCGUccgucucGGaGGAGCc -3'
miRNA:   3'- -GGAGCa--AGCGGUG-GAGCA-------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 127483 0.69 0.960565
Target:  5'- gUUCGUggcCGCCGcCCUCG-GGcgGGAGCa -3'
miRNA:   3'- gGAGCAa--GCGGU-GGAGCaCCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 133625 0.69 0.956969
Target:  5'- gCUCGaUCGUCGCCUCGUcccuGGcGGAGu -3'
miRNA:   3'- gGAGCaAGCGGUGGAGCA----CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 148080 0.7 0.949122
Target:  5'- aCCUCGcggcgCGUCGgcCCUCGUGGcUAGAGu -3'
miRNA:   3'- -GGAGCaa---GCGGU--GGAGCACC-AUCUUg -5'
8951 3' -53 NC_002512.2 + 90935 0.74 0.804342
Target:  5'- gCCggcgCGgcCGCCGCCgUCGUGGUGGugguGCu -3'
miRNA:   3'- -GGa---GCaaGCGGUGG-AGCACCAUCu---UG- -5'
8951 3' -53 NC_002512.2 + 154620 0.72 0.861344
Target:  5'- gCCgccgUCGCCGCCaUCGUGGggacGGGACg -3'
miRNA:   3'- -GGagcaAGCGGUGG-AGCACCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 86626 0.71 0.914497
Target:  5'- uCCUCGUccUCGUCGgCgcggUGUGGUGGAucGCg -3'
miRNA:   3'- -GGAGCA--AGCGGUgGa---GCACCAUCU--UG- -5'
8951 3' -53 NC_002512.2 + 2668 0.71 0.920135
Target:  5'- gCCUCccgGUcCGCCGCCUCcUGGUccgcgcgcgGGAGCg -3'
miRNA:   3'- -GGAG---CAaGCGGUGGAGcACCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 19745 0.7 0.935663
Target:  5'- --aCGUUgGCCAgCCa-GUGGUAGAACu -3'
miRNA:   3'- ggaGCAAgCGGU-GGagCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 106348 0.7 0.935663
Target:  5'- gCUCGUcccgcgagcUCGCCACCUCGcggcccgucaGGUGuuGAACa -3'
miRNA:   3'- gGAGCA---------AGCGGUGGAGCa---------CCAU--CUUG- -5'
8951 3' -53 NC_002512.2 + 47714 0.7 0.944863
Target:  5'- uCCU-GcgCGCCGCCUCGcGGgaggAGGGCu -3'
miRNA:   3'- -GGAgCaaGCGGUGGAGCaCCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 33719 0.7 0.944863
Target:  5'- cCCUCGggcUCGCC-CCUCGUcGaccGGAGCg -3'
miRNA:   3'- -GGAGCa--AGCGGuGGAGCAcCa--UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.