miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 36458 0.73 0.587714
Target:  5'- gGCCGCGGuCGCGCUCGuAGUCGUcGUc -3'
miRNA:   3'- -UGGUGCUuGCGCGGGC-UCAGCAuCGu -5'
8952 3' -57.1 NC_002512.2 + 95207 0.73 0.587714
Target:  5'- uCCGCGGucGCGCGUCCGuuGUCGUAGa- -3'
miRNA:   3'- uGGUGCU--UGCGCGGGCu-CAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 155361 0.73 0.587714
Target:  5'- -aCACGAGCgGCGCUCGAgGUCGgGGCGg -3'
miRNA:   3'- ugGUGCUUG-CGCGGGCU-CAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 83824 0.73 0.577939
Target:  5'- gGCgGCGGcucCGgGCCCGGGUCGUcGCAg -3'
miRNA:   3'- -UGgUGCUu--GCgCGGGCUCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 128298 0.73 0.577939
Target:  5'- --uGCGggUGCacGCCCGAGUCGcGGCAc -3'
miRNA:   3'- uggUGCuuGCG--CGGGCUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 60828 0.71 0.686012
Target:  5'- cGCCGCGGAgccccuCGCGCCCGAGgagaugcCGgcGCc -3'
miRNA:   3'- -UGGUGCUU------GCGCGGGCUCa------GCauCGu -5'
8952 3' -57.1 NC_002512.2 + 37818 0.71 0.695739
Target:  5'- gUCAgGGACGCGUCCGAGcCGUAcaggucGCAa -3'
miRNA:   3'- uGGUgCUUGCGCGGGCUCaGCAU------CGU- -5'
8952 3' -57.1 NC_002512.2 + 84507 0.69 0.814719
Target:  5'- cGCCGCGu-CGgGCuCCcAGUCGUAGCc -3'
miRNA:   3'- -UGGUGCuuGCgCG-GGcUCAGCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 13705 0.69 0.814719
Target:  5'- gAUCACGGGCGCGauCCCGAGacgCGggAGCc -3'
miRNA:   3'- -UGGUGCUUGCGC--GGGCUCa--GCa-UCGu -5'
8952 3' -57.1 NC_002512.2 + 135546 0.69 0.806271
Target:  5'- cGCCACGAGCuGgGCuuCUGGGUCG-AGCGu -3'
miRNA:   3'- -UGGUGCUUG-CgCG--GGCUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 102918 0.69 0.806271
Target:  5'- gACCGCGGACcccuacugggaGCGCCagaGGGUCGaccggGGCGc -3'
miRNA:   3'- -UGGUGCUUG-----------CGCGGg--CUCAGCa----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 38945 0.69 0.797676
Target:  5'- cGCC-CGcgUGCGCCCGGGUC-UGGUu -3'
miRNA:   3'- -UGGuGCuuGCGCGGGCUCAGcAUCGu -5'
8952 3' -57.1 NC_002512.2 + 85367 0.7 0.788943
Target:  5'- gACCGCGcccACGCGgaCCGAGUCcgGGCAg -3'
miRNA:   3'- -UGGUGCu--UGCGCg-GGCUCAGcaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 129294 0.7 0.771091
Target:  5'- aGCCGCGGGCGCGguuuccccaCCCGAG-CGcccGGCGc -3'
miRNA:   3'- -UGGUGCUUGCGC---------GGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 121535 0.7 0.761988
Target:  5'- aGCUcCG-GCGCGCCgGGGUCG-AGCAc -3'
miRNA:   3'- -UGGuGCuUGCGCGGgCUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 71291 0.7 0.761988
Target:  5'- cCCGgGAGCGCaccacGUCCGAGUCGUAcGUg -3'
miRNA:   3'- uGGUgCUUGCG-----CGGGCUCAGCAU-CGu -5'
8952 3' -57.1 NC_002512.2 + 19930 0.7 0.752779
Target:  5'- gACCuuGAGgaccCGCGCCCG-GUCG-AGCAg -3'
miRNA:   3'- -UGGugCUU----GCGCGGGCuCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 114031 0.7 0.743471
Target:  5'- cGCCucgGCGAACGCcucgaggcagggGCCCGcGUCGUgcAGCAc -3'
miRNA:   3'- -UGG---UGCUUGCG------------CGGGCuCAGCA--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 111813 0.7 0.742535
Target:  5'- cGCCGCGAACGUcugcggguccgggGUCCGguGGUCGUAGa- -3'
miRNA:   3'- -UGGUGCUUGCG-------------CGGGC--UCAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 102152 0.71 0.724591
Target:  5'- gGCCGCGAcCGCGgCUGGGUCGUcgaucGCu -3'
miRNA:   3'- -UGGUGCUuGCGCgGGCUCAGCAu----CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.