miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 81823 0.72 0.675265
Target:  5'- gACCGCG-GCGCGUCCGAucugccggaccggGUCGgggAGCGu -3'
miRNA:   3'- -UGGUGCuUGCGCGGGCU-------------CAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 82013 0.72 0.636911
Target:  5'- cGCgGCGAGcCGuCGCCCGGGUCGgGGUc -3'
miRNA:   3'- -UGgUGCUU-GC-GCGGGCUCAGCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 82089 0.7 0.752779
Target:  5'- aGCCACGGGCGCGCguaagcuuuuuCCGAGcCGcgAGUc -3'
miRNA:   3'- -UGGUGCUUGCGCG-----------GGCUCaGCa-UCGu -5'
8952 3' -57.1 NC_002512.2 + 82327 0.68 0.869164
Target:  5'- gGCCGCGGGC-CGCCCcGGcggGUAGCGg -3'
miRNA:   3'- -UGGUGCUUGcGCGGGcUCag-CAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 83441 0.66 0.939519
Target:  5'- gGCC-UGAAgUGCGCCCGgacgaAGUCGUgcggGGCGg -3'
miRNA:   3'- -UGGuGCUU-GCGCGGGC-----UCAGCA----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 83824 0.73 0.577939
Target:  5'- gGCgGCGGcucCGgGCCCGGGUCGUcGCAg -3'
miRNA:   3'- -UGgUGCUu--GCgCGGGCUCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 84507 0.69 0.814719
Target:  5'- cGCCGCGu-CGgGCuCCcAGUCGUAGCc -3'
miRNA:   3'- -UGGUGCuuGCgCG-GGcUCAGCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 84853 0.77 0.379383
Target:  5'- gGCCgucccggGCGuuGCGCGCCCGGG-CGUAGCGg -3'
miRNA:   3'- -UGG-------UGCu-UGCGCGGGCUCaGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 85367 0.7 0.788943
Target:  5'- gACCGCGcccACGCGgaCCGAGUCcgGGCAg -3'
miRNA:   3'- -UGGUGCu--UGCGCg-GGCUCAGcaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 86654 0.67 0.914012
Target:  5'- gAUCGCGGuggcCGCGUCCGAG-CGgacGGCGc -3'
miRNA:   3'- -UGGUGCUu---GCGCGGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 90103 0.67 0.908248
Target:  5'- gGCCugGAGggUGCGCCgGAcgauGUCGgacAGCAc -3'
miRNA:   3'- -UGGugCUU--GCGCGGgCU----CAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 90922 0.73 0.606365
Target:  5'- gGCCGCGAACGgGgCCGGcgcggccgccgccGUCGUGGUg -3'
miRNA:   3'- -UGGUGCUUGCgCgGGCU-------------CAGCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 95021 0.66 0.934861
Target:  5'- cCC-CGAcgGCGuCGCCCGAGaCGUcGCGc -3'
miRNA:   3'- uGGuGCU--UGC-GCGGGCUCaGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 95207 0.73 0.587714
Target:  5'- uCCGCGGucGCGCGUCCGuuGUCGUAGa- -3'
miRNA:   3'- uGGUGCU--UGCGCGGGCu-CAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 95772 0.66 0.919557
Target:  5'- cGCCugGAcggGgGCGUCCGAG-CGguaGGCGc -3'
miRNA:   3'- -UGGugCU---UgCGCGGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 96308 0.69 0.839111
Target:  5'- cGCCGCGGGCGgGCC--GGUCGccGCAc -3'
miRNA:   3'- -UGGUGCUUGCgCGGgcUCAGCauCGU- -5'
8952 3' -57.1 NC_002512.2 + 96776 0.68 0.869164
Target:  5'- cACCAUGGGCGUaGCCgacgggGAGUCGcUGGCGc -3'
miRNA:   3'- -UGGUGCUUGCG-CGGg-----CUCAGC-AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 97315 0.67 0.908248
Target:  5'- cCCugGc-CGCGCCCGccggGGUCGagGGCGg -3'
miRNA:   3'- uGGugCuuGCGCGGGC----UCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 97425 0.71 0.695739
Target:  5'- gGCCACGAugGUGCUgGcgcuGUCGcUGGCGc -3'
miRNA:   3'- -UGGUGCUugCGCGGgCu---CAGC-AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 97506 0.68 0.876197
Target:  5'- gGCCAUGGcgGUGUUCGGGaUCGUGGCGu -3'
miRNA:   3'- -UGGUGCUugCGCGGGCUC-AGCAUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.