miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 37334 0.67 0.913446
Target:  5'- gGCCACGGACGCGCUguCGGGaaagagggugaucUCGUcGUc -3'
miRNA:   3'- -UGGUGCUUGCGCGG--GCUC-------------AGCAuCGu -5'
8952 3' -57.1 NC_002512.2 + 37818 0.71 0.695739
Target:  5'- gUCAgGGACGCGUCCGAGcCGUAcaggucGCAa -3'
miRNA:   3'- uGGUgCUUGCGCGGGCUCaGCAU------CGU- -5'
8952 3' -57.1 NC_002512.2 + 38945 0.69 0.797676
Target:  5'- cGCC-CGcgUGCGCCCGGGUC-UGGUu -3'
miRNA:   3'- -UGGuGCuuGCGCGGGCUCAGcAUCGu -5'
8952 3' -57.1 NC_002512.2 + 40354 0.71 0.686012
Target:  5'- uGCCGCGGACGCcgaccgcggcgaGCCCGGGccCGgAGCGu -3'
miRNA:   3'- -UGGUGCUUGCG------------CGGGCUCa-GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 41334 0.67 0.908248
Target:  5'- cGCCGCcgGAGC-UGCCCGAGUUGgccUGGUAg -3'
miRNA:   3'- -UGGUG--CUUGcGCGGGCUCAGC---AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 51271 0.67 0.896065
Target:  5'- aACCuacgUGGACGCGgcgaCCGAGUCGgcGGCGg -3'
miRNA:   3'- -UGGu---GCUUGCGCg---GGCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 60828 0.71 0.686012
Target:  5'- cGCCGCGGAgccccuCGCGCCCGAGgagaugcCGgcGCc -3'
miRNA:   3'- -UGGUGCUU------GCGCGGGCUCa------GCauCGu -5'
8952 3' -57.1 NC_002512.2 + 60866 0.69 0.839111
Target:  5'- cGCuCGCGGACGcCGCCCGGaUCGccgAGCc -3'
miRNA:   3'- -UG-GUGCUUGC-GCGGGCUcAGCa--UCGu -5'
8952 3' -57.1 NC_002512.2 + 60927 0.67 0.889651
Target:  5'- gACCGCGAA-GCGCuUCGcGUCGgagAGCGa -3'
miRNA:   3'- -UGGUGCUUgCGCG-GGCuCAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 64637 0.72 0.646768
Target:  5'- uCCGCG-ACGCGUCCGcgaGGUCGUGGa- -3'
miRNA:   3'- uGGUGCuUGCGCGGGC---UCAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 67279 0.66 0.939519
Target:  5'- cCCAUG-ACGCGCUgGgcGGUCGagUAGCAg -3'
miRNA:   3'- uGGUGCuUGCGCGGgC--UCAGC--AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 67715 0.68 0.875503
Target:  5'- gACCgACGGACGCGgCCGcuuucgcGGUCGgcGUg -3'
miRNA:   3'- -UGG-UGCUUGCGCgGGC-------UCAGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 67755 0.67 0.906476
Target:  5'- cUCGCGAGCcggggucgucuccgGCGCCgGGGUCGUcGGUg -3'
miRNA:   3'- uGGUGCUUG--------------CGCGGgCUCAGCA-UCGu -5'
8952 3' -57.1 NC_002512.2 + 71291 0.7 0.761988
Target:  5'- cCCGgGAGCGCaccacGUCCGAGUCGUAcGUg -3'
miRNA:   3'- uGGUgCUUGCG-----CGGGCUCAGCAU-CGu -5'
8952 3' -57.1 NC_002512.2 + 71712 0.67 0.908248
Target:  5'- cACCACGAGcCGCGuCCCGAGggCcUGGa- -3'
miRNA:   3'- -UGGUGCUU-GCGC-GGGCUCa-GcAUCgu -5'
8952 3' -57.1 NC_002512.2 + 73386 0.69 0.823013
Target:  5'- uACgACGAugGCuGCUCGAGaaCGUGGCu -3'
miRNA:   3'- -UGgUGCUugCG-CGGGCUCa-GCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 73613 0.67 0.883027
Target:  5'- gGCCAcucggagaaguCGAAgGCGCcgCCGGGcUCGUAGUAg -3'
miRNA:   3'- -UGGU-----------GCUUgCGCG--GGCUC-AGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 74635 0.66 0.939519
Target:  5'- cGCCGCGcGACG-GCCCGGGggagaUCGggggAGCu -3'
miRNA:   3'- -UGGUGC-UUGCgCGGGCUC-----AGCa---UCGu -5'
8952 3' -57.1 NC_002512.2 + 77226 0.7 0.771091
Target:  5'- gACCgggagGCGAACgaGCGCCCGGG-CGgugAGCGg -3'
miRNA:   3'- -UGG-----UGCUUG--CGCGGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 79604 0.67 0.902264
Target:  5'- uUCGCGGGCGgcaGCgCCGGGUCGcGGUAc -3'
miRNA:   3'- uGGUGCUUGCg--CG-GGCUCAGCaUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.