miRNA display CGI


Results 21 - 40 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 199221 0.66 0.93675
Target:  5'- gACCGCGccgcccgguagauccGGCGCaGCCCGAuGUCG-AGUc -3'
miRNA:   3'- -UGGUGC---------------UUGCG-CGGGCU-CAGCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 198228 0.69 0.805418
Target:  5'- cACCACGGcCGCGCCCGcGcCGUccgggacGGCc -3'
miRNA:   3'- -UGGUGCUuGCGCGGGCuCaGCA-------UCGu -5'
8952 3' -57.1 NC_002512.2 + 198144 0.66 0.919557
Target:  5'- -gCGCGAGCcccGCGCgggCCGGGUCGgcGCc -3'
miRNA:   3'- ugGUGCUUG---CGCG---GGCUCAGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 193321 0.66 0.924358
Target:  5'- cGCCGCuucGGCGCGUucaucugcggucuCCGAGUCGacaAGCAg -3'
miRNA:   3'- -UGGUGc--UUGCGCG-------------GGCUCAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 192269 0.67 0.908248
Target:  5'- -aCGCGAGCGUGCUCGGGaCGcucuGCGu -3'
miRNA:   3'- ugGUGCUUGCGCGGGCUCaGCau--CGU- -5'
8952 3' -57.1 NC_002512.2 + 180126 0.67 0.902264
Target:  5'- uCCAUGAugGCGUCCaGcGUCG-GGCGg -3'
miRNA:   3'- uGGUGCUugCGCGGG-CuCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 178830 0.77 0.380177
Target:  5'- cGCC-CGGACGUGCUCGGGUCGcaGGCAc -3'
miRNA:   3'- -UGGuGCUUGCGCGGGCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 174616 0.69 0.839898
Target:  5'- cCCGCGAGCGgaucacgcuguugaaGUCCGGGUCGccGGCAc -3'
miRNA:   3'- uGGUGCUUGCg--------------CGGGCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 173630 0.71 0.686012
Target:  5'- cGCCGCGGcgGCGaacCCCGGGUCGggGGCGg -3'
miRNA:   3'- -UGGUGCU--UGCgc-GGGCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 166654 0.67 0.883027
Target:  5'- gGCCAcCGuguUGCGCCCGAGUgCG-GGUAc -3'
miRNA:   3'- -UGGU-GCuu-GCGCGGGCUCA-GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 156216 0.69 0.823013
Target:  5'- uGCCGC--ACGCGCUCccGUCGUGGUAc -3'
miRNA:   3'- -UGGUGcuUGCGCGGGcuCAGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 155361 0.73 0.587714
Target:  5'- -aCACGAGCgGCGCUCGAgGUCGgGGCGg -3'
miRNA:   3'- ugGUGCUUG-CGCGGGCU-CAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 155311 0.69 0.814719
Target:  5'- gGCCuCGAGCaccagaGCGCCCaGGUCGcGGCGg -3'
miRNA:   3'- -UGGuGCUUG------CGCGGGcUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 155080 0.66 0.943957
Target:  5'- cGCCGCugccGgGUGCCCGGG-CGUcAGCAg -3'
miRNA:   3'- -UGGUGcu--UgCGCGGGCUCaGCA-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 154740 0.67 0.883027
Target:  5'- uCCGCGGcCGCGUCCGAcggcGUCGcGGUg -3'
miRNA:   3'- uGGUGCUuGCGCGGGCU----CAGCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 154261 0.66 0.919557
Target:  5'- cCCGCGugcGCGUGCCCGcGUgcgCGUGcGCAg -3'
miRNA:   3'- uGGUGCu--UGCGCGGGCuCA---GCAU-CGU- -5'
8952 3' -57.1 NC_002512.2 + 152912 0.69 0.831146
Target:  5'- cACCACGAGCucgucucggGuCGCCaGAGUCGggAGCGa -3'
miRNA:   3'- -UGGUGCUUG---------C-GCGGgCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 150912 0.67 0.908248
Target:  5'- gGCCGCGGACGacgcuaaGUCCGAGcCGgacuuaGGCu -3'
miRNA:   3'- -UGGUGCUUGCg------CGGGCUCaGCa-----UCGu -5'
8952 3' -57.1 NC_002512.2 + 149016 0.67 0.896065
Target:  5'- cGCCGCGGAC-CGCCCGAcacCG-AGCc -3'
miRNA:   3'- -UGGUGCUUGcGCGGGCUca-GCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 147197 0.67 0.914012
Target:  5'- cGCgCACGGACGCcgacaGCCCGAG-CGggaccGCGa -3'
miRNA:   3'- -UG-GUGCUUGCG-----CGGGCUCaGCau---CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.