miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 173630 0.71 0.686012
Target:  5'- cGCCGCGGcgGCGaacCCCGGGUCGggGGCGg -3'
miRNA:   3'- -UGGUGCU--UGCgc-GGGCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 60828 0.71 0.686012
Target:  5'- cGCCGCGGAgccccuCGCGCCCGAGgagaugcCGgcGCc -3'
miRNA:   3'- -UGGUGCUU------GCGCGGGCUCa------GCauCGu -5'
8952 3' -57.1 NC_002512.2 + 135908 0.71 0.686012
Target:  5'- uUCGCGGACGCGCagcgacacgucCUGAGUCGguacGGCAu -3'
miRNA:   3'- uGGUGCUUGCGCG-----------GGCUCAGCa---UCGU- -5'
8952 3' -57.1 NC_002512.2 + 40354 0.71 0.686012
Target:  5'- uGCCGCGGACGCcgaccgcggcgaGCCCGGGccCGgAGCGu -3'
miRNA:   3'- -UGGUGCUUGCG------------CGGGCUCa-GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 97425 0.71 0.695739
Target:  5'- gGCCACGAugGUGCUgGcgcuGUCGcUGGCGc -3'
miRNA:   3'- -UGGUGCUugCGCGGgCu---CAGC-AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 37818 0.71 0.695739
Target:  5'- gUCAgGGACGCGUCCGAGcCGUAcaggucGCAa -3'
miRNA:   3'- uGGUgCUUGCGCGGGCUCaGCAU------CGU- -5'
8952 3' -57.1 NC_002512.2 + 143769 0.71 0.715037
Target:  5'- uCCGCGAccuccucCGCGCCCGGGUCcaugAGCc -3'
miRNA:   3'- uGGUGCUu------GCGCGGGCUCAGca--UCGu -5'
8952 3' -57.1 NC_002512.2 + 146083 0.71 0.715037
Target:  5'- cGCCGCcGGCGCGCCCGAcgcgGUCcucGGCGg -3'
miRNA:   3'- -UGGUGcUUGCGCGGGCU----CAGca-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 120859 0.71 0.724591
Target:  5'- cCCuCGAACGCGCCgCGGGUCc--GCAg -3'
miRNA:   3'- uGGuGCUUGCGCGG-GCUCAGcauCGU- -5'
8952 3' -57.1 NC_002512.2 + 102152 0.71 0.724591
Target:  5'- gGCCGCGAcCGCGgCUGGGUCGUcgaucGCu -3'
miRNA:   3'- -UGGUGCUuGCGCgGGCUCAGCAu----CGu -5'
8952 3' -57.1 NC_002512.2 + 111813 0.7 0.742535
Target:  5'- cGCCGCGAACGUcugcggguccgggGUCCGguGGUCGUAGa- -3'
miRNA:   3'- -UGGUGCUUGCG-------------CGGGC--UCAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 144704 0.7 0.743471
Target:  5'- cCCACGGGacccguCGCGCCUGGGUCaGcUGGCGc -3'
miRNA:   3'- uGGUGCUU------GCGCGGGCUCAG-C-AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 114031 0.7 0.743471
Target:  5'- cGCCucgGCGAACGCcucgaggcagggGCCCGcGUCGUgcAGCAc -3'
miRNA:   3'- -UGG---UGCUUGCG------------CGGGCuCAGCA--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 19930 0.7 0.752779
Target:  5'- gACCuuGAGgaccCGCGCCCG-GUCG-AGCAg -3'
miRNA:   3'- -UGGugCUU----GCGCGGGCuCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 82089 0.7 0.752779
Target:  5'- aGCCACGGGCGCGCguaagcuuuuuCCGAGcCGcgAGUc -3'
miRNA:   3'- -UGGUGCUUGCGCG-----------GGCUCaGCa-UCGu -5'
8952 3' -57.1 NC_002512.2 + 122262 0.7 0.752779
Target:  5'- aACCACGGGCaGcCGCCCGAcUCGcUGGUg -3'
miRNA:   3'- -UGGUGCUUG-C-GCGGGCUcAGC-AUCGu -5'
8952 3' -57.1 NC_002512.2 + 71291 0.7 0.761988
Target:  5'- cCCGgGAGCGCaccacGUCCGAGUCGUAcGUg -3'
miRNA:   3'- uGGUgCUUGCG-----CGGGCUCAGCAU-CGu -5'
8952 3' -57.1 NC_002512.2 + 121535 0.7 0.761988
Target:  5'- aGCUcCG-GCGCGCCgGGGUCG-AGCAc -3'
miRNA:   3'- -UGGuGCuUGCGCGGgCUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 77226 0.7 0.771091
Target:  5'- gACCgggagGCGAACgaGCGCCCGGG-CGgugAGCGg -3'
miRNA:   3'- -UGG-----UGCUUG--CGCGGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 129294 0.7 0.771091
Target:  5'- aGCCGCGGGCGCGguuuccccaCCCGAG-CGcccGGCGc -3'
miRNA:   3'- -UGGUGCUUGCGC---------GGGCUCaGCa--UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.