Results 61 - 80 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8952 | 3' | -57.1 | NC_002512.2 | + | 79604 | 0.67 | 0.902264 |
Target: 5'- uUCGCGGGCGgcaGCgCCGGGUCGcGGUAc -3' miRNA: 3'- uGGUGCUUGCg--CG-GGCUCAGCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 51271 | 0.67 | 0.896065 |
Target: 5'- aACCuacgUGGACGCGgcgaCCGAGUCGgcGGCGg -3' miRNA: 3'- -UGGu---GCUUGCGCg---GGCUCAGCa-UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 2460 | 0.67 | 0.896065 |
Target: 5'- gACCGCGGccCGCGCCCGcgcgcgagaguaGGUCcgGGCGg -3' miRNA: 3'- -UGGUGCUu-GCGCGGGC------------UCAGcaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 149016 | 0.67 | 0.896065 |
Target: 5'- cGCCGCGGAC-CGCCCGAcacCG-AGCc -3' miRNA: 3'- -UGGUGCUUGcGCGGGCUca-GCaUCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 60927 | 0.67 | 0.889651 |
Target: 5'- gACCGCGAA-GCGCuUCGcGUCGgagAGCGa -3' miRNA: 3'- -UGGUGCUUgCGCG-GGCuCAGCa--UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 219411 | 0.67 | 0.889651 |
Target: 5'- cGCCGCG-ACGCccacGCCCGGGgCGgcGGCGg -3' miRNA: 3'- -UGGUGCuUGCG----CGGGCUCaGCa-UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 105149 | 0.67 | 0.883027 |
Target: 5'- uCCACGAACaUGgCCGAGUCGgcGgGg -3' miRNA: 3'- uGGUGCUUGcGCgGGCUCAGCauCgU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 11678 | 0.67 | 0.883027 |
Target: 5'- cGCCGCGGcccgaggcGgGgGCCCGAGgggCGaGGCAg -3' miRNA: 3'- -UGGUGCU--------UgCgCGGGCUCa--GCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 73613 | 0.67 | 0.883027 |
Target: 5'- gGCCAcucggagaaguCGAAgGCGCcgCCGGGcUCGUAGUAg -3' miRNA: 3'- -UGGU-----------GCUUgCGCG--GGCUC-AGCAUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 166654 | 0.67 | 0.883027 |
Target: 5'- gGCCAcCGuguUGCGCCCGAGUgCG-GGUAc -3' miRNA: 3'- -UGGU-GCuu-GCGCGGGCUCA-GCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 154740 | 0.67 | 0.883027 |
Target: 5'- uCCGCGGcCGCGUCCGAcggcGUCGcGGUg -3' miRNA: 3'- uGGUGCUuGCGCGGGCU----CAGCaUCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 97506 | 0.68 | 0.876197 |
Target: 5'- gGCCAUGGcgGUGUUCGGGaUCGUGGCGu -3' miRNA: 3'- -UGGUGCUugCGCGGGCUC-AGCAUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 67715 | 0.68 | 0.875503 |
Target: 5'- gACCgACGGACGCGgCCGcuuucgcGGUCGgcGUg -3' miRNA: 3'- -UGG-UGCUUGCGCgGGC-------UCAGCauCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 213213 | 0.68 | 0.869164 |
Target: 5'- gUCugGGAC-CG-CCGGGUCGUGGCc -3' miRNA: 3'- uGGugCUUGcGCgGGCUCAGCAUCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 82327 | 0.68 | 0.869164 |
Target: 5'- gGCCGCGGGC-CGCCCcGGcggGUAGCGg -3' miRNA: 3'- -UGGUGCUUGcGCGGGcUCag-CAUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 96776 | 0.68 | 0.869164 |
Target: 5'- cACCAUGGGCGUaGCCgacgggGAGUCGcUGGCGc -3' miRNA: 3'- -UGGUGCUUGCG-CGGg-----CUCAGC-AUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 207934 | 0.68 | 0.861934 |
Target: 5'- gGCC-CGGugGUGCUCGGGUcCGUccucucGGCAc -3' miRNA: 3'- -UGGuGCUugCGCGGGCUCA-GCA------UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 3104 | 0.68 | 0.861934 |
Target: 5'- gACCACG-GCGuCGCCCGAGaCGUccucGCc -3' miRNA: 3'- -UGGUGCuUGC-GCGGGCUCaGCAu---CGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 8415 | 0.68 | 0.861934 |
Target: 5'- cGCCAgGAACGCGCaCCGcggccGGUCGgacgaccGCGc -3' miRNA: 3'- -UGGUgCUUGCGCG-GGC-----UCAGCau-----CGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 207454 | 0.68 | 0.861934 |
Target: 5'- aGCCcaGCGGaugggguuGCGCGUCCGAGUCGcucgucucGGCGc -3' miRNA: 3'- -UGG--UGCU--------UGCGCGGGCUCAGCa-------UCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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