miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 86654 0.67 0.914012
Target:  5'- gAUCGCGGuggcCGCGUCCGAG-CGgacGGCGc -3'
miRNA:   3'- -UGGUGCUu---GCGCGGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 32574 0.67 0.914012
Target:  5'- cGCCGCGG--GUGCCgGGGUCGUGuCGg -3'
miRNA:   3'- -UGGUGCUugCGCGGgCUCAGCAUcGU- -5'
8952 3' -57.1 NC_002512.2 + 37334 0.67 0.913446
Target:  5'- gGCCACGGACGCGCUguCGGGaaagagggugaucUCGUcGUc -3'
miRNA:   3'- -UGGUGCUUGCGCGG--GCUC-------------AGCAuCGu -5'
8952 3' -57.1 NC_002512.2 + 112948 0.67 0.908248
Target:  5'- cGCCcCGGucgaGC-CCCGAGUCGUcgGGCGu -3'
miRNA:   3'- -UGGuGCUug--CGcGGGCUCAGCA--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 41334 0.67 0.908248
Target:  5'- cGCCGCcgGAGC-UGCCCGAGUUGgccUGGUAg -3'
miRNA:   3'- -UGGUG--CUUGcGCGGGCUCAGC---AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 71712 0.67 0.908248
Target:  5'- cACCACGAGcCGCGuCCCGAGggCcUGGa- -3'
miRNA:   3'- -UGGUGCUU-GCGC-GGGCUCa-GcAUCgu -5'
8952 3' -57.1 NC_002512.2 + 97315 0.67 0.908248
Target:  5'- cCCugGc-CGCGCCCGccggGGUCGagGGCGg -3'
miRNA:   3'- uGGugCuuGCGCGGGC----UCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 139246 0.67 0.908248
Target:  5'- gACCGCGGcCGCgGCgCCGGGUCGcgccgcccGGCGc -3'
miRNA:   3'- -UGGUGCUuGCG-CG-GGCUCAGCa-------UCGU- -5'
8952 3' -57.1 NC_002512.2 + 90103 0.67 0.908248
Target:  5'- gGCCugGAGggUGCGCCgGAcgauGUCGgacAGCAc -3'
miRNA:   3'- -UGGugCUU--GCGCGGgCU----CAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 131629 0.67 0.908248
Target:  5'- gGCCACGAagACGCuCUCGgAGUUG-AGCAc -3'
miRNA:   3'- -UGGUGCU--UGCGcGGGC-UCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 150912 0.67 0.908248
Target:  5'- gGCCGCGGACGacgcuaaGUCCGAGcCGgacuuaGGCu -3'
miRNA:   3'- -UGGUGCUUGCg------CGGGCUCaGCa-----UCGu -5'
8952 3' -57.1 NC_002512.2 + 192269 0.67 0.908248
Target:  5'- -aCGCGAGCGUGCUCGGGaCGcucuGCGu -3'
miRNA:   3'- ugGUGCUUGCGCGGGCUCaGCau--CGU- -5'
8952 3' -57.1 NC_002512.2 + 16377 0.67 0.908248
Target:  5'- gACC-CGGACGaCGCCCucgaAGUCGacgGGCGc -3'
miRNA:   3'- -UGGuGCUUGC-GCGGGc---UCAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 67755 0.67 0.906476
Target:  5'- cUCGCGAGCcggggucgucuccgGCGCCgGGGUCGUcGGUg -3'
miRNA:   3'- uGGUGCUUG--------------CGCGGgCUCAGCA-UCGu -5'
8952 3' -57.1 NC_002512.2 + 34037 0.67 0.902264
Target:  5'- uCCGCGAGCGCcgguuGCUCGAGgCGUgccccacgacGGCGg -3'
miRNA:   3'- uGGUGCUUGCG-----CGGGCUCaGCA----------UCGU- -5'
8952 3' -57.1 NC_002512.2 + 79604 0.67 0.902264
Target:  5'- uUCGCGGGCGgcaGCgCCGGGUCGcGGUAc -3'
miRNA:   3'- uGGUGCUUGCg--CG-GGCUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 100459 0.67 0.902264
Target:  5'- gACgGCGAagaGCGCGUUCucGGUCGUGGCc -3'
miRNA:   3'- -UGgUGCU---UGCGCGGGc-UCAGCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 212033 0.67 0.902264
Target:  5'- -gCGCGAGCaccGCGCCCGGGagG-AGCu -3'
miRNA:   3'- ugGUGCUUG---CGCGGGCUCagCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 218233 0.67 0.902264
Target:  5'- gGCCGCG-GCGCcgauauauGUCCGGGUCGgcGUc -3'
miRNA:   3'- -UGGUGCuUGCG--------CGGGCUCAGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 180126 0.67 0.902264
Target:  5'- uCCAUGAugGCGUCCaGcGUCG-GGCGg -3'
miRNA:   3'- uGGUGCUugCGCGGG-CuCAGCaUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.