miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 147446 0.7 0.732991
Target:  5'- uGCGcaGACGGcGGCCGUCUgucGCUGCUg -3'
miRNA:   3'- cCGCucCUGCU-CCGGCAGA---UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 154586 0.67 0.882769
Target:  5'- cGGCGAGGGCGAcGGCggcauCGUCgccGCcGCc- -3'
miRNA:   3'- -CCGCUCCUGCU-CCG-----GCAGa--UGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 156835 0.72 0.576163
Target:  5'- uGCGAGGccuGCgGGGGCCG-CUGCUGCc- -3'
miRNA:   3'- cCGCUCC---UG-CUCCGGCaGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 165001 0.66 0.913915
Target:  5'- cGGcCGAcGGA-GAGGCCGUCcccccCUGCg- -3'
miRNA:   3'- -CC-GCU-CCUgCUCCGGCAGau---GACGaa -5'
8953 5' -57.7 NC_002512.2 + 166213 0.66 0.892033
Target:  5'- cGGCGAGGA--GGGCCG-CgcgcgcguggggaagUACUGCg- -3'
miRNA:   3'- -CCGCUCCUgcUCCGGCaG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 167154 0.68 0.796941
Target:  5'- cGGCGuGccccGCGAGGCCGUCgaccgcgacgcGCUGCg- -3'
miRNA:   3'- -CCGCuCc---UGCUCCGGCAGa----------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 181410 0.69 0.751797
Target:  5'- cGcCGGGGACGcguucaggauGGCCGUCaGCUGCg- -3'
miRNA:   3'- cC-GCUCCUGCu---------CCGGCAGaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 183509 0.8 0.225589
Target:  5'- cGCGAGGGgGAGGCCGUCcucgccugGCUGCg- -3'
miRNA:   3'- cCGCUCCUgCUCCGGCAGa-------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 185385 0.7 0.70419
Target:  5'- cGGCGGcGGcuGCGAGGCCGUCUuCUccGCc- -3'
miRNA:   3'- -CCGCU-CC--UGCUCCGGCAGAuGA--CGaa -5'
8953 5' -57.7 NC_002512.2 + 189911 0.76 0.410677
Target:  5'- cGGCGAGGACGGcGGCUccgGUCUcggcggcgACUGCUc -3'
miRNA:   3'- -CCGCUCCUGCU-CCGG---CAGA--------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 190214 0.67 0.86156
Target:  5'- cGGCGcggucguccGGGACGGccaCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC---------UCCUGCUccgGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 191316 0.69 0.779245
Target:  5'- cGGCGGGGuCaAGGUgGUCUGCgGCg- -3'
miRNA:   3'- -CCGCUCCuGcUCCGgCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 192616 0.66 0.908122
Target:  5'- cGGCGGGcGACGGcGGCCucaccuUCUACgGCa- -3'
miRNA:   3'- -CCGCUC-CUGCU-CCGGc-----AGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 197178 0.66 0.920031
Target:  5'- cGCGccucuucguccucauGGAcccgcuCGGGGCCGUCUACgGCUUc -3'
miRNA:   3'- cCGCu--------------CCU------GCUCCGGCAGAUGaCGAA- -5'
8953 5' -57.7 NC_002512.2 + 199505 0.67 0.875902
Target:  5'- cGCGAGGAucagguCGAGGUCGUCgg--GCg- -3'
miRNA:   3'- cCGCUCCU------GCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 200277 0.7 0.713858
Target:  5'- gGGaCGAGGACGAcGaGCCGUCggACUGg-- -3'
miRNA:   3'- -CC-GCUCCUGCU-C-CGGCAGa-UGACgaa -5'
8953 5' -57.7 NC_002512.2 + 200369 0.66 0.889429
Target:  5'- gGGCGGGGGgugaGGGGCgGgg-GCUGCa- -3'
miRNA:   3'- -CCGCUCCUg---CUCCGgCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 200492 0.69 0.767474
Target:  5'- uGCGAGGGCGgcguccuccgaccgGGGCuCGUCcucacGCUGCUg -3'
miRNA:   3'- cCGCUCCUGC--------------UCCG-GCAGa----UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 200842 0.73 0.56639
Target:  5'- aGCGGGGGCGcGGCgCGUCU-CUGCc- -3'
miRNA:   3'- cCGCUCCUGCuCCG-GCAGAuGACGaa -5'
8953 5' -57.7 NC_002512.2 + 200902 0.7 0.732991
Target:  5'- aGCGugaacGcCGAGGCCGUgUACUGCUUc -3'
miRNA:   3'- cCGCuc---CuGCUCCGGCAgAUGACGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.