miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 109029 0.71 0.655155
Target:  5'- gGGCGGGGACGAGGaCCGggggg-GCUc -3'
miRNA:   3'- -CCGCUCCUGCUCC-GGCagaugaCGAa -5'
8953 5' -57.7 NC_002512.2 + 110282 0.73 0.546978
Target:  5'- aGGCGAGcGGCGAGGgCGaC-ACUGCUg -3'
miRNA:   3'- -CCGCUC-CUGCUCCgGCaGaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 110724 0.66 0.913915
Target:  5'- uGGCGuuGGCcaGGGCCGUgUugUGCa- -3'
miRNA:   3'- -CCGCucCUGc-UCCGGCAgAugACGaa -5'
8953 5' -57.7 NC_002512.2 + 116596 0.72 0.595815
Target:  5'- gGGCGAGGGCggGAGGcCCGcCgcgGCUGCc- -3'
miRNA:   3'- -CCGCUCCUG--CUCC-GGCaGa--UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 117021 0.66 0.889429
Target:  5'- gGGCcgGAGGACGcGGCCaUCgagcuguucggGCUGCUg -3'
miRNA:   3'- -CCG--CUCCUGCuCCGGcAGa----------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 118197 0.71 0.645265
Target:  5'- cGCGAcccCGAGGCCGUCUGgUGCg- -3'
miRNA:   3'- cCGCUccuGCUCCGGCAGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 122934 0.66 0.895876
Target:  5'- aGGaCGAGGACGAGGaggacuCCGUCgACgagGUg- -3'
miRNA:   3'- -CC-GCUCCUGCUCC------GGCAGaUGa--CGaa -5'
8953 5' -57.7 NC_002512.2 + 123029 0.68 0.82242
Target:  5'- cGCGAcGAgGAGGUCGUCgagaucgACUGCa- -3'
miRNA:   3'- cCGCUcCUgCUCCGGCAGa------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 124204 0.71 0.665028
Target:  5'- gGGacaGAGGcaccGCGAGuaccgcGCCGUCUGCUGCg- -3'
miRNA:   3'- -CCg--CUCC----UGCUC------CGGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 124564 0.7 0.723461
Target:  5'- cGGCGAGGAgGAGGCCcgggacGUCaAgaGCg- -3'
miRNA:   3'- -CCGCUCCUgCUCCGG------CAGaUgaCGaa -5'
8953 5' -57.7 NC_002512.2 + 126913 0.7 0.742439
Target:  5'- cGGCGGGGG-GAGGCCGg--GCUgGCg- -3'
miRNA:   3'- -CCGCUCCUgCUCCGGCagaUGA-CGaa -5'
8953 5' -57.7 NC_002512.2 + 128680 0.68 0.814079
Target:  5'- cGGC--GGACGGGGCCGUCgugAUcgGCa- -3'
miRNA:   3'- -CCGcuCCUGCUCCGGCAGa--UGa-CGaa -5'
8953 5' -57.7 NC_002512.2 + 129093 0.7 0.713858
Target:  5'- -cCGAGGACGGGcGgCGUCUGCgGCg- -3'
miRNA:   3'- ccGCUCCUGCUC-CgGCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 129613 0.66 0.908122
Target:  5'- cGCGGaucACGAGGCCGUCgACcGCUUu -3'
miRNA:   3'- cCGCUcc-UGCUCCGGCAGaUGaCGAA- -5'
8953 5' -57.7 NC_002512.2 + 131456 0.7 0.708064
Target:  5'- --gGAGGACGGGGCUGUCgcuaugggugcagagUGCUGUa- -3'
miRNA:   3'- ccgCUCCUGCUCCGGCAG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 133796 0.69 0.788159
Target:  5'- cGGCGGGGACGAcGGUCG-CgccgGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGGCaGa---UgACGaa -5'
8953 5' -57.7 NC_002512.2 + 134162 0.7 0.731092
Target:  5'- cGGCGGGGACGGGgaGCCGUCUuccccucccgGCc- -3'
miRNA:   3'- -CCGCUCCUGCUC--CGGCAGAuga-------CGaa -5'
8953 5' -57.7 NC_002512.2 + 134861 0.66 0.919487
Target:  5'- cGCGAcgucucGGGCGAcGCCGUCggggaccuggACUGCUc -3'
miRNA:   3'- cCGCU------CCUGCUcCGGCAGa---------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 145498 0.67 0.875902
Target:  5'- cGCaGAGGACGcuGCCGgg-GCUGCUc -3'
miRNA:   3'- cCG-CUCCUGCucCGGCagaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 146113 0.7 0.70419
Target:  5'- cGGCGGcGGCGGcGCCGUCUuCUGCa- -3'
miRNA:   3'- -CCGCUcCUGCUcCGGCAGAuGACGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.