Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 199505 | 0.67 | 0.875902 |
Target: 5'- cGCGAGGAucagguCGAGGUCGUCgg--GCg- -3' miRNA: 3'- cCGCUCCU------GCUCCGGCAGaugaCGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 145498 | 0.67 | 0.875902 |
Target: 5'- cGCaGAGGACGcuGCCGgg-GCUGCUc -3' miRNA: 3'- cCG-CUCCUGCucCGGCagaUGACGAa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 167154 | 0.68 | 0.796941 |
Target: 5'- cGGCGuGccccGCGAGGCCGUCgaccgcgacgcGCUGCg- -3' miRNA: 3'- -CCGCuCc---UGCUCCGGCAGa----------UGACGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 10160 | 0.68 | 0.830599 |
Target: 5'- cGGCGAGGcACGGGGgCCGcCU-CUcGCg- -3' miRNA: 3'- -CCGCUCC-UGCUCC-GGCaGAuGA-CGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 123029 | 0.68 | 0.82242 |
Target: 5'- cGCGAcGAgGAGGUCGUCgagaucgACUGCa- -3' miRNA: 3'- cCGCUcCUgCUCCGGCAGa------UGACGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 106943 | 0.68 | 0.796941 |
Target: 5'- cGGUGAaGACGAGGCCGaagUUGCaGCg- -3' miRNA: 3'- -CCGCUcCUGCUCCGGCa--GAUGaCGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 213518 | 0.68 | 0.830599 |
Target: 5'- gGGCGucguccGGGuCGGGGUgcccucggagCGUCUGCUGCg- -3' miRNA: 3'- -CCGC------UCCuGCUCCG----------GCAGAUGACGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 90568 | 0.68 | 0.796941 |
Target: 5'- gGGCGAGGGCGAcGGCCccgGUCUccuucccccgggGCggGCg- -3' miRNA: 3'- -CCGCUCCUGCU-CCGG---CAGA------------UGa-CGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 95700 | 0.68 | 0.795195 |
Target: 5'- cGGCGGGGACGggGGGCCGggaggggaagACgGCUc -3' miRNA: 3'- -CCGCUCCUGC--UCCGGCaga-------UGaCGAa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 212166 | 0.68 | 0.814079 |
Target: 5'- cGGCG-GGACGgcuGGGCCGUCcagGC-GCg- -3' miRNA: 3'- -CCGCuCCUGC---UCCGGCAGa--UGaCGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 128680 | 0.68 | 0.814079 |
Target: 5'- cGGC--GGACGGGGCCGUCgugAUcgGCa- -3' miRNA: 3'- -CCGcuCCUGCUCCGGCAGa--UGa-CGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 81940 | 0.68 | 0.814079 |
Target: 5'- cGGCGAGGGCGgagGGGCCGgc-GC-GCg- -3' miRNA: 3'- -CCGCUCCUGC---UCCGGCagaUGaCGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 191316 | 0.69 | 0.779245 |
Target: 5'- cGGCGGGGuCaAGGUgGUCUGCgGCg- -3' miRNA: 3'- -CCGCUCCuGcUCCGgCAGAUGaCGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 46377 | 0.69 | 0.779245 |
Target: 5'- aGGCGAGGACGGccucccccucgcGGCCGUagGCgGCc- -3' miRNA: 3'- -CCGCUCCUGCU------------CCGGCAgaUGaCGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 88620 | 0.69 | 0.788159 |
Target: 5'- cGGCGucGGGACGAacguGGUCGUCgcGCUGUUc -3' miRNA: 3'- -CCGC--UCCUGCU----CCGGCAGa-UGACGAa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 200492 | 0.69 | 0.767474 |
Target: 5'- uGCGAGGGCGgcguccuccgaccgGGGCuCGUCcucacGCUGCUg -3' miRNA: 3'- cCGCUCCUGC--------------UCCG-GCAGa----UGACGAa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 181410 | 0.69 | 0.751797 |
Target: 5'- cGcCGGGGACGcguucaggauGGCCGUCaGCUGCg- -3' miRNA: 3'- cC-GCUCCUGCu---------CCGGCAGaUGACGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 133796 | 0.69 | 0.788159 |
Target: 5'- cGGCGGGGACGAcGGUCG-CgccgGgUGCg- -3' miRNA: 3'- -CCGCUCCUGCU-CCGGCaGa---UgACGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 102128 | 0.69 | 0.779245 |
Target: 5'- cGGagGGGGACccuGGCCGUCUACgGCc- -3' miRNA: 3'- -CCg-CUCCUGcu-CCGGCAGAUGaCGaa -5' |
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8953 | 5' | -57.7 | NC_002512.2 | + | 101659 | 0.7 | 0.732991 |
Target: 5'- cGGCGGccgcGGACGccGGGCCGaUCUACgucgGCg- -3' miRNA: 3'- -CCGCU----CCUGC--UCCGGC-AGAUGa---CGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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