Results 1 - 20 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 117021 | 0.66 | 0.889429 |
Target: 5'- gGGCcgGAGGACGcGGCCaUCgagcuguucggGCUGCUg -3' miRNA: 3'- -CCG--CUCCUGCuCCGGcAGa----------UGACGAa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 134861 | 0.66 | 0.919487 |
Target: 5'- cGCGAcgucucGGGCGAcGCCGUCggggaccuggACUGCUc -3' miRNA: 3'- cCGCU------CCUGCUcCGGCAGa---------UGACGAa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 197178 | 0.66 | 0.920031 |
Target: 5'- cGCGccucuucguccucauGGAcccgcuCGGGGCCGUCUACgGCUUc -3' miRNA: 3'- cCGCu--------------CCU------GCUCCGGCAGAUGaCGAA- -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 165001 | 0.66 | 0.913915 |
Target: 5'- cGGcCGAcGGA-GAGGCCGUCcccccCUGCg- -3' miRNA: 3'- -CC-GCU-CCUgCUCCGGCAGau---GACGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 110724 | 0.66 | 0.913915 |
Target: 5'- uGGCGuuGGCcaGGGCCGUgUugUGCa- -3' miRNA: 3'- -CCGCucCUGc-UCCGGCAgAugACGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 192616 | 0.66 | 0.908122 |
Target: 5'- cGGCGGGcGACGGcGGCCucaccuUCUACgGCa- -3' miRNA: 3'- -CCGCUC-CUGCU-CCGGc-----AGAUGaCGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 227898 | 0.66 | 0.902108 |
Target: 5'- gGGCGAGucCGAGGCCGgagACggacGCg- -3' miRNA: 3'- -CCGCUCcuGCUCCGGCagaUGa---CGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 122934 | 0.66 | 0.895876 |
Target: 5'- aGGaCGAGGACGAGGaggacuCCGUCgACgagGUg- -3' miRNA: 3'- -CC-GCUCCUGCUCC------GGCAGaUGa--CGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 166213 | 0.66 | 0.892033 |
Target: 5'- cGGCGAGGA--GGGCCG-CgcgcgcguggggaagUACUGCg- -3' miRNA: 3'- -CCGCUCCUgcUCCGGCaG---------------AUGACGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 99913 | 0.66 | 0.910466 |
Target: 5'- gGGCGccgggggcccgccgaAGGGCGGcGUCGgCUGCUGCUg -3' miRNA: 3'- -CCGC---------------UCCUGCUcCGGCaGAUGACGAa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 129613 | 0.66 | 0.908122 |
Target: 5'- cGCGGaucACGAGGCCGUCgACcGCUUu -3' miRNA: 3'- cCGCUcc-UGCUCCGGCAGaUGaCGAA- -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 24305 | 0.66 | 0.901495 |
Target: 5'- cGGCG-GGGCGAacugcggucccccGGCgGUCggGCUGUUg -3' miRNA: 3'- -CCGCuCCUGCU-------------CCGgCAGa-UGACGAa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 200369 | 0.66 | 0.889429 |
Target: 5'- gGGCGGGGGgugaGGGGCgGgg-GCUGCa- -3' miRNA: 3'- -CCGCUCCUg---CUCCGgCagaUGACGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 43595 | 0.66 | 0.895876 |
Target: 5'- cGGCGucgcGGACGAGGaCgCGgagGCUGCg- -3' miRNA: 3'- -CCGCu---CCUGCUCC-G-GCagaUGACGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 45384 | 0.67 | 0.86156 |
Target: 5'- -aCGAGGACGcGGGCCGgg-ACUGUc- -3' miRNA: 3'- ccGCUCCUGC-UCCGGCagaUGACGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 98575 | 0.67 | 0.882769 |
Target: 5'- gGGCGccucGGGCGgcGGGUCGUCcgcGCUGCa- -3' miRNA: 3'- -CCGCu---CCUGC--UCCGGCAGa--UGACGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 154586 | 0.67 | 0.882769 |
Target: 5'- cGGCGAGGGCGAcGGCggcauCGUCgccGCcGCc- -3' miRNA: 3'- -CCGCUCCUGCU-CCG-----GCAGa--UGaCGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 81989 | 0.67 | 0.868831 |
Target: 5'- cGGCGGGGGCGucucggGGGCgGUC-GCgGCg- -3' miRNA: 3'- -CCGCUCCUGC------UCCGgCAGaUGaCGaa -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 80009 | 0.67 | 0.875902 |
Target: 5'- aGCGGcagccggagccGGACGAGG-CGUC-GCUGCUUu -3' miRNA: 3'- cCGCU-----------CCUGCUCCgGCAGaUGACGAA- -5' |
|||||||
8953 | 5' | -57.7 | NC_002512.2 | + | 199505 | 0.67 | 0.875902 |
Target: 5'- cGCGAGGAucagguCGAGGUCGUCgg--GCg- -3' miRNA: 3'- cCGCUCCU------GCUCCGGCAGaugaCGaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home