miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 81940 0.68 0.814079
Target:  5'- cGGCGAGGGCGgagGGGCCGgc-GC-GCg- -3'
miRNA:   3'- -CCGCUCCUGC---UCCGGCagaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 134162 0.7 0.731092
Target:  5'- cGGCGGGGACGGGgaGCCGUCUuccccucccgGCc- -3'
miRNA:   3'- -CCGCUCCUGCUC--CGGCAGAuga-------CGaa -5'
8953 5' -57.7 NC_002512.2 + 147446 0.7 0.732991
Target:  5'- uGCGcaGACGGcGGCCGUCUgucGCUGCUg -3'
miRNA:   3'- cCGCucCUGCU-CCGGCAGA---UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 101659 0.7 0.732991
Target:  5'- cGGCGGccgcGGACGccGGGCCGaUCUACgucgGCg- -3'
miRNA:   3'- -CCGCU----CCUGC--UCCGGC-AGAUGa---CGaa -5'
8953 5' -57.7 NC_002512.2 + 46377 0.69 0.779245
Target:  5'- aGGCGAGGACGGccucccccucgcGGCCGUagGCgGCc- -3'
miRNA:   3'- -CCGCUCCUGCU------------CCGGCAgaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 102128 0.69 0.779245
Target:  5'- cGGagGGGGACccuGGCCGUCUACgGCc- -3'
miRNA:   3'- -CCg-CUCCUGcu-CCGGCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 191316 0.69 0.779245
Target:  5'- cGGCGGGGuCaAGGUgGUCUGCgGCg- -3'
miRNA:   3'- -CCGCUCCuGcUCCGgCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 133796 0.69 0.788159
Target:  5'- cGGCGGGGACGAcGGUCG-CgccgGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGGCaGa---UgACGaa -5'
8953 5' -57.7 NC_002512.2 + 88620 0.69 0.788159
Target:  5'- cGGCGucGGGACGAacguGGUCGUCgcGCUGUUc -3'
miRNA:   3'- -CCGC--UCCUGCU----CCGGCAGa-UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 124564 0.7 0.723461
Target:  5'- cGGCGAGGAgGAGGCCcgggacGUCaAgaGCg- -3'
miRNA:   3'- -CCGCUCCUgCUCCGG------CAGaUgaCGaa -5'
8953 5' -57.7 NC_002512.2 + 129093 0.7 0.713858
Target:  5'- -cCGAGGACGGGcGgCGUCUGCgGCg- -3'
miRNA:   3'- ccGCUCCUGCUC-CgGCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 131456 0.7 0.708064
Target:  5'- --gGAGGACGGGGCUGUCgcuaugggugcagagUGCUGUa- -3'
miRNA:   3'- ccgCUCCUGCUCCGGCAG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 110282 0.73 0.546978
Target:  5'- aGGCGAGcGGCGAGGgCGaC-ACUGCUg -3'
miRNA:   3'- -CCGCUC-CUGCUCCgGCaGaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 116596 0.72 0.595815
Target:  5'- gGGCGAGGGCggGAGGcCCGcCgcgGCUGCc- -3'
miRNA:   3'- -CCGCUCCUG--CUCC-GGCaGa--UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 103176 0.72 0.605682
Target:  5'- cGGCGAGGACGAGGaCCugaGcCUGCccgGCg- -3'
miRNA:   3'- -CCGCUCCUGCUCC-GG---CaGAUGa--CGaa -5'
8953 5' -57.7 NC_002512.2 + 9547 0.71 0.635366
Target:  5'- cGGCGuuGACGAGGCCGUCcg--GCc- -3'
miRNA:   3'- -CCGCucCUGCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 118197 0.71 0.645265
Target:  5'- cGCGAcccCGAGGCCGUCUGgUGCg- -3'
miRNA:   3'- cCGCUccuGCUCCGGCAGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 124204 0.71 0.665028
Target:  5'- gGGacaGAGGcaccGCGAGuaccgcGCCGUCUGCUGCg- -3'
miRNA:   3'- -CCg--CUCC----UGCUC------CGGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 2299 0.71 0.674875
Target:  5'- uGCGGGuGGCGGGGC--UCUGCUGCg- -3'
miRNA:   3'- cCGCUC-CUGCUCCGgcAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 226089 0.71 0.68469
Target:  5'- cGGCuGAGGagGCGucGCCGUCUucauCUGCUg -3'
miRNA:   3'- -CCG-CUCC--UGCucCGGCAGAu---GACGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.