miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 2299 0.71 0.674875
Target:  5'- uGCGGGuGGCGGGGC--UCUGCUGCg- -3'
miRNA:   3'- cCGCUC-CUGCUCCGgcAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 9547 0.71 0.635366
Target:  5'- cGGCGuuGACGAGGCCGUCcg--GCc- -3'
miRNA:   3'- -CCGCucCUGCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 10160 0.68 0.830599
Target:  5'- cGGCGAGGcACGGGGgCCGcCU-CUcGCg- -3'
miRNA:   3'- -CCGCUCC-UGCUCC-GGCaGAuGA-CGaa -5'
8953 5' -57.7 NC_002512.2 + 24305 0.66 0.901495
Target:  5'- cGGCG-GGGCGAacugcggucccccGGCgGUCggGCUGUUg -3'
miRNA:   3'- -CCGCuCCUGCU-------------CCGgCAGa-UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 43595 0.66 0.895876
Target:  5'- cGGCGucgcGGACGAGGaCgCGgagGCUGCg- -3'
miRNA:   3'- -CCGCu---CCUGCUCC-G-GCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 45384 0.67 0.86156
Target:  5'- -aCGAGGACGcGGGCCGgg-ACUGUc- -3'
miRNA:   3'- ccGCUCCUGC-UCCGGCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 46377 0.69 0.779245
Target:  5'- aGGCGAGGACGGccucccccucgcGGCCGUagGCgGCc- -3'
miRNA:   3'- -CCGCUCCUGCU------------CCGGCAgaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 73911 0.77 0.347107
Target:  5'- cGCGGGGACGuacAGGCCGU--GCUGCUUc -3'
miRNA:   3'- cCGCUCCUGC---UCCGGCAgaUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 80009 0.67 0.875902
Target:  5'- aGCGGcagccggagccGGACGAGG-CGUC-GCUGCUUu -3'
miRNA:   3'- cCGCU-----------CCUGCUCCgGCAGaUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 81940 0.68 0.814079
Target:  5'- cGGCGAGGGCGgagGGGCCGgc-GC-GCg- -3'
miRNA:   3'- -CCGCUCCUGC---UCCGGCagaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 81989 0.67 0.868831
Target:  5'- cGGCGGGGGCGucucggGGGCgGUC-GCgGCg- -3'
miRNA:   3'- -CCGCUCCUGC------UCCGgCAGaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 88620 0.69 0.788159
Target:  5'- cGGCGucGGGACGAacguGGUCGUCgcGCUGUUc -3'
miRNA:   3'- -CCGC--UCCUGCU----CCGGCAGa-UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 90568 0.68 0.796941
Target:  5'- gGGCGAGGGCGAcGGCCccgGUCUccuucccccgggGCggGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGG---CAGA------------UGa-CGaa -5'
8953 5' -57.7 NC_002512.2 + 95700 0.68 0.795195
Target:  5'- cGGCGGGGACGggGGGCCGggaggggaagACgGCUc -3'
miRNA:   3'- -CCGCUCCUGC--UCCGGCaga-------UGaCGAa -5'
8953 5' -57.7 NC_002512.2 + 98575 0.67 0.882769
Target:  5'- gGGCGccucGGGCGgcGGGUCGUCcgcGCUGCa- -3'
miRNA:   3'- -CCGCu---CCUGC--UCCGGCAGa--UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 99913 0.66 0.910466
Target:  5'- gGGCGccgggggcccgccgaAGGGCGGcGUCGgCUGCUGCUg -3'
miRNA:   3'- -CCGC---------------UCCUGCUcCGGCaGAUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 101659 0.7 0.732991
Target:  5'- cGGCGGccgcGGACGccGGGCCGaUCUACgucgGCg- -3'
miRNA:   3'- -CCGCU----CCUGC--UCCGGC-AGAUGa---CGaa -5'
8953 5' -57.7 NC_002512.2 + 102128 0.69 0.779245
Target:  5'- cGGagGGGGACccuGGCCGUCUACgGCc- -3'
miRNA:   3'- -CCg-CUCCUGcu-CCGGCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 103176 0.72 0.605682
Target:  5'- cGGCGAGGACGAGGaCCugaGcCUGCccgGCg- -3'
miRNA:   3'- -CCGCUCCUGCUCC-GG---CaGAUGa--CGaa -5'
8953 5' -57.7 NC_002512.2 + 106943 0.68 0.796941
Target:  5'- cGGUGAaGACGAGGCCGaagUUGCaGCg- -3'
miRNA:   3'- -CCGCUcCUGCUCCGGCa--GAUGaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.