miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 228669 0.73 0.53735
Target:  5'- cGGgGAGGACGGGGCCGgg-GCcGCc- -3'
miRNA:   3'- -CCgCUCCUGCUCCGGCagaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 227898 0.66 0.902108
Target:  5'- gGGCGAGucCGAGGCCGgagACggacGCg- -3'
miRNA:   3'- -CCGCUCcuGCUCCGGCagaUGa---CGaa -5'
8953 5' -57.7 NC_002512.2 + 226089 0.71 0.68469
Target:  5'- cGGCuGAGGagGCGucGCCGUCUucauCUGCUg -3'
miRNA:   3'- -CCG-CUCC--UGCucCGGCAGAu---GACGAa -5'
8953 5' -57.7 NC_002512.2 + 220546 0.72 0.615568
Target:  5'- cGCGAGGGCGucacGCCGUCUACcugGCc- -3'
miRNA:   3'- cCGCUCCUGCuc--CGGCAGAUGa--CGaa -5'
8953 5' -57.7 NC_002512.2 + 219230 0.7 0.70419
Target:  5'- cGGCGAGGuCGGgaucgugcucGGCCGcCUcugGCUGCUc -3'
miRNA:   3'- -CCGCUCCuGCU----------CCGGCaGA---UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 215215 0.72 0.605682
Target:  5'- cGGCG-GGGCGGacaacGCCGUCUAcCUGCUc -3'
miRNA:   3'- -CCGCuCCUGCUc----CGGCAGAU-GACGAa -5'
8953 5' -57.7 NC_002512.2 + 215150 0.72 0.595815
Target:  5'- gGGgGAGGcgACGAgcaccuGGCCGUCcUGCUGCUc -3'
miRNA:   3'- -CCgCUCC--UGCU------CCGGCAG-AUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 214455 1.07 0.004041
Target:  5'- cGGCGAGGACGAGGCCGUCUACUGCUUc -3'
miRNA:   3'- -CCGCUCCUGCUCCGGCAGAUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 213518 0.68 0.830599
Target:  5'- gGGCGucguccGGGuCGGGGUgcccucggagCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC------UCCuGCUCCG----------GCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 212166 0.68 0.814079
Target:  5'- cGGCG-GGACGgcuGGGCCGUCcagGC-GCg- -3'
miRNA:   3'- -CCGCuCCUGC---UCCGGCAGa--UGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 210832 0.71 0.68469
Target:  5'- cGGUG-GGACacGGCCGUCUggggGCUGCUc -3'
miRNA:   3'- -CCGCuCCUGcuCCGGCAGA----UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 207523 0.73 0.556659
Target:  5'- -aCGAGGACGGGGCCGcgucCUcccGCUGCg- -3'
miRNA:   3'- ccGCUCCUGCUCCGGCa---GA---UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 201683 0.71 0.655155
Target:  5'- cGGCGAGGGC--GGCCGcgUCUGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGcuCCGGC--AGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 200902 0.7 0.732991
Target:  5'- aGCGugaacGcCGAGGCCGUgUACUGCUUc -3'
miRNA:   3'- cCGCuc---CuGCUCCGGCAgAUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 200842 0.73 0.56639
Target:  5'- aGCGGGGGCGcGGCgCGUCU-CUGCc- -3'
miRNA:   3'- cCGCUCCUGCuCCG-GCAGAuGACGaa -5'
8953 5' -57.7 NC_002512.2 + 200492 0.69 0.767474
Target:  5'- uGCGAGGGCGgcguccuccgaccgGGGCuCGUCcucacGCUGCUg -3'
miRNA:   3'- cCGCUCCUGC--------------UCCG-GCAGa----UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 200369 0.66 0.889429
Target:  5'- gGGCGGGGGgugaGGGGCgGgg-GCUGCa- -3'
miRNA:   3'- -CCGCUCCUg---CUCCGgCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 200277 0.7 0.713858
Target:  5'- gGGaCGAGGACGAcGaGCCGUCggACUGg-- -3'
miRNA:   3'- -CC-GCUCCUGCU-C-CGGCAGa-UGACgaa -5'
8953 5' -57.7 NC_002512.2 + 199505 0.67 0.875902
Target:  5'- cGCGAGGAucagguCGAGGUCGUCgg--GCg- -3'
miRNA:   3'- cCGCUCCU------GCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 197178 0.66 0.920031
Target:  5'- cGCGccucuucguccucauGGAcccgcuCGGGGCCGUCUACgGCUUc -3'
miRNA:   3'- cCGCu--------------CCU------GCUCCGGCAGAUGaCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.