miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 192616 0.66 0.908122
Target:  5'- cGGCGGGcGACGGcGGCCucaccuUCUACgGCa- -3'
miRNA:   3'- -CCGCUC-CUGCU-CCGGc-----AGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 191316 0.69 0.779245
Target:  5'- cGGCGGGGuCaAGGUgGUCUGCgGCg- -3'
miRNA:   3'- -CCGCUCCuGcUCCGgCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 190214 0.67 0.86156
Target:  5'- cGGCGcggucguccGGGACGGccaCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC---------UCCUGCUccgGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 189911 0.76 0.410677
Target:  5'- cGGCGAGGACGGcGGCUccgGUCUcggcggcgACUGCUc -3'
miRNA:   3'- -CCGCUCCUGCU-CCGG---CAGA--------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 185385 0.7 0.70419
Target:  5'- cGGCGGcGGcuGCGAGGCCGUCUuCUccGCc- -3'
miRNA:   3'- -CCGCU-CC--UGCUCCGGCAGAuGA--CGaa -5'
8953 5' -57.7 NC_002512.2 + 183509 0.8 0.225589
Target:  5'- cGCGAGGGgGAGGCCGUCcucgccugGCUGCg- -3'
miRNA:   3'- cCGCUCCUgCUCCGGCAGa-------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 181410 0.69 0.751797
Target:  5'- cGcCGGGGACGcguucaggauGGCCGUCaGCUGCg- -3'
miRNA:   3'- cC-GCUCCUGCu---------CCGGCAGaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 167154 0.68 0.796941
Target:  5'- cGGCGuGccccGCGAGGCCGUCgaccgcgacgcGCUGCg- -3'
miRNA:   3'- -CCGCuCc---UGCUCCGGCAGa----------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 166213 0.66 0.892033
Target:  5'- cGGCGAGGA--GGGCCG-CgcgcgcguggggaagUACUGCg- -3'
miRNA:   3'- -CCGCUCCUgcUCCGGCaG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 165001 0.66 0.913915
Target:  5'- cGGcCGAcGGA-GAGGCCGUCcccccCUGCg- -3'
miRNA:   3'- -CC-GCU-CCUgCUCCGGCAGau---GACGaa -5'
8953 5' -57.7 NC_002512.2 + 156835 0.72 0.576163
Target:  5'- uGCGAGGccuGCgGGGGCCG-CUGCUGCc- -3'
miRNA:   3'- cCGCUCC---UG-CUCCGGCaGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 154586 0.67 0.882769
Target:  5'- cGGCGAGGGCGAcGGCggcauCGUCgccGCcGCc- -3'
miRNA:   3'- -CCGCUCCUGCU-CCG-----GCAGa--UGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 147446 0.7 0.732991
Target:  5'- uGCGcaGACGGcGGCCGUCUgucGCUGCUg -3'
miRNA:   3'- cCGCucCUGCU-CCGGCAGA---UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 146113 0.7 0.70419
Target:  5'- cGGCGGcGGCGGcGCCGUCUuCUGCa- -3'
miRNA:   3'- -CCGCUcCUGCUcCGGCAGAuGACGaa -5'
8953 5' -57.7 NC_002512.2 + 145498 0.67 0.875902
Target:  5'- cGCaGAGGACGcuGCCGgg-GCUGCUc -3'
miRNA:   3'- cCG-CUCCUGCucCGGCagaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 134861 0.66 0.919487
Target:  5'- cGCGAcgucucGGGCGAcGCCGUCggggaccuggACUGCUc -3'
miRNA:   3'- cCGCU------CCUGCUcCGGCAGa---------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 134162 0.7 0.731092
Target:  5'- cGGCGGGGACGGGgaGCCGUCUuccccucccgGCc- -3'
miRNA:   3'- -CCGCUCCUGCUC--CGGCAGAuga-------CGaa -5'
8953 5' -57.7 NC_002512.2 + 133796 0.69 0.788159
Target:  5'- cGGCGGGGACGAcGGUCG-CgccgGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGGCaGa---UgACGaa -5'
8953 5' -57.7 NC_002512.2 + 131456 0.7 0.708064
Target:  5'- --gGAGGACGGGGCUGUCgcuaugggugcagagUGCUGUa- -3'
miRNA:   3'- ccgCUCCUGCUCCGGCAG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 129613 0.66 0.908122
Target:  5'- cGCGGaucACGAGGCCGUCgACcGCUUu -3'
miRNA:   3'- cCGCUcc-UGCUCCGGCAGaUGaCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.