miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 133391 0.67 0.761034
Target:  5'- gGCGGuCGCCCGGAccauggagGGCGAgacGGccGCGc -3'
miRNA:   3'- gCGCU-GCGGGCCU--------CCGCUau-CCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 107159 0.67 0.761034
Target:  5'- gCGCGuuucCGCCCGGgaGGGCGuugaugccGUGCGg -3'
miRNA:   3'- -GCGCu---GCGGGCC--UCCGCuauc----CACGC- -5'
8954 3' -60.6 NC_002512.2 + 38041 0.67 0.761034
Target:  5'- gGgGACGCCgGaGGGGUGggAGG-GCGc -3'
miRNA:   3'- gCgCUGCGGgC-CUCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 150280 0.67 0.752085
Target:  5'- cCGCGAcccggcgcugcCGCCCGcgaaGAGGCGG-AGGaGCGa -3'
miRNA:   3'- -GCGCU-----------GCGGGC----CUCCGCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 103065 0.67 0.748479
Target:  5'- gCGCGACGacgggacggacuaCgGGAGGCGAUcccGGGgacggGCGc -3'
miRNA:   3'- -GCGCUGCg------------GgCCUCCGCUA---UCCa----CGC- -5'
8954 3' -60.6 NC_002512.2 + 124748 0.68 0.743044
Target:  5'- aCGCGucCGUCgGGugcGGCGAcgacGGGUGCGa -3'
miRNA:   3'- -GCGCu-GCGGgCCu--CCGCUa---UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 40369 0.68 0.743044
Target:  5'- cCGCGGCgagcccggGCCCGGAgcgucuccaccuGGCGGUgacggccaGGGUGUa -3'
miRNA:   3'- -GCGCUG--------CGGGCCU------------CCGCUA--------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 38914 0.68 0.743044
Target:  5'- gGCGACgGCCCGGAGgggccgccGCGGcGGGcGCc -3'
miRNA:   3'- gCGCUG-CGGGCCUC--------CGCUaUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 226735 0.68 0.743044
Target:  5'- aGCGAggcUGuCCCGGAgacGGCGGaGGcGUGCGg -3'
miRNA:   3'- gCGCU---GC-GGGCCU---CCGCUaUC-CACGC- -5'
8954 3' -60.6 NC_002512.2 + 118958 0.68 0.743044
Target:  5'- aGCGugGggCGGcGGCGggAGGUGCu -3'
miRNA:   3'- gCGCugCggGCCuCCGCuaUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 94738 0.68 0.743044
Target:  5'- gGCGAacccCGCCCGGucgcAGGCGuc-GGUGaCGa -3'
miRNA:   3'- gCGCU----GCGGGCC----UCCGCuauCCAC-GC- -5'
8954 3' -60.6 NC_002512.2 + 222336 0.68 0.743044
Target:  5'- gGCGGCGCCUccaGGAGGagg-AGGaGCGg -3'
miRNA:   3'- gCGCUGCGGG---CCUCCgcuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 227606 0.68 0.743044
Target:  5'- cCGCaGCGgCCGGAgGGCGGgcGGcgGCGg -3'
miRNA:   3'- -GCGcUGCgGGCCU-CCGCUauCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 212595 0.68 0.733918
Target:  5'- aCGCGAUGUCCGGAGaCGAggaggacgacgAGGacGCGg -3'
miRNA:   3'- -GCGCUGCGGGCCUCcGCUa----------UCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 17031 0.68 0.733918
Target:  5'- gGgGACGCUCGGAGGgGAcGGacgGCGc -3'
miRNA:   3'- gCgCUGCGGGCCUCCgCUaUCca-CGC- -5'
8954 3' -60.6 NC_002512.2 + 219780 0.68 0.733918
Target:  5'- cCGCGGCcgGCCCGGccgGGGacacaGAUAGGggacGCGc -3'
miRNA:   3'- -GCGCUG--CGGGCC---UCCg----CUAUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 125150 0.68 0.733918
Target:  5'- cCGCGGgGgcCCCGGGGGCGGgcGGacgGUGa -3'
miRNA:   3'- -GCGCUgC--GGGCCUCCGCUauCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 154386 0.68 0.724715
Target:  5'- gGCGAaaguccCGCCCccgucGGAGGCGAUcgGGGUcCGa -3'
miRNA:   3'- gCGCU------GCGGG-----CCUCCGCUA--UCCAcGC- -5'
8954 3' -60.6 NC_002512.2 + 162013 0.68 0.724715
Target:  5'- uGCGGacCGCCUGGccgacGGCGAgguGGUGCc -3'
miRNA:   3'- gCGCU--GCGGGCCu----CCGCUau-CCACGc -5'
8954 3' -60.6 NC_002512.2 + 118196 0.68 0.724715
Target:  5'- cCGCGAC-CCC-GAGGCcgucuGGUGCGa -3'
miRNA:   3'- -GCGCUGcGGGcCUCCGcuau-CCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.