miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 153395 0.66 0.80413
Target:  5'- aGCGACguggaGCgCGGcGGCGGUcgAGGUGgCGg -3'
miRNA:   3'- gCGCUG-----CGgGCCuCCGCUA--UCCAC-GC- -5'
8954 3' -60.6 NC_002512.2 + 202512 0.66 0.80413
Target:  5'- gGCGGCGgaggCGGAGGCGGcggcgGGG-GCGg -3'
miRNA:   3'- gCGCUGCgg--GCCUCCGCUa----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 213653 0.66 0.80413
Target:  5'- gGCGACGacgacgaugaCGGAGGCGGaGGGgagcccgGCGu -3'
miRNA:   3'- gCGCUGCgg--------GCCUCCGCUaUCCa------CGC- -5'
8954 3' -60.6 NC_002512.2 + 127199 0.66 0.80413
Target:  5'- uCGcCGACGCCCGagacGGGGgGAUgAGGgagGUGa -3'
miRNA:   3'- -GC-GCUGCGGGC----CUCCgCUA-UCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 227225 0.66 0.80413
Target:  5'- gGCGGCGgaCCgGGAGGCGcgGcGGacggGCGg -3'
miRNA:   3'- gCGCUGC--GGgCCUCCGCuaU-CCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 204988 0.67 0.795755
Target:  5'- gGCGACGgggaCCGGaAGGCG--GGG-GCGa -3'
miRNA:   3'- gCGCUGCg---GGCC-UCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 91919 0.67 0.795755
Target:  5'- gGCGGCGCgCCGucGGCGGccgacuuggucuUGGGcGCGa -3'
miRNA:   3'- gCGCUGCG-GGCcuCCGCU------------AUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 131736 0.67 0.795755
Target:  5'- aCGCGGCGaccgCCGG-GGCGGgcGGccGCGa -3'
miRNA:   3'- -GCGCUGCg---GGCCuCCGCUauCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 224133 0.67 0.78725
Target:  5'- cCGUGgacccGCGCCgGGAGGCGGacgcgugAGGcgggGCGg -3'
miRNA:   3'- -GCGC-----UGCGGgCCUCCGCUa------UCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 201446 0.67 0.78725
Target:  5'- uCGCGAUcucgGCCUcGAGGUGGUccccgucggccgGGGUGCa -3'
miRNA:   3'- -GCGCUG----CGGGcCUCCGCUA------------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 129099 0.67 0.78725
Target:  5'- aGCG-UGUCggCGGAGGCGuuccGGGUGCa -3'
miRNA:   3'- gCGCuGCGG--GCCUCCGCua--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 120780 0.67 0.78725
Target:  5'- gGCGGcCGUCggCGGGGGCGGcGGGacgGCGg -3'
miRNA:   3'- gCGCU-GCGG--GCCUCCGCUaUCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 21215 0.67 0.778624
Target:  5'- aGCGGCccccgggacgccGCCCGG-GGCGGagacgGGG-GCGg -3'
miRNA:   3'- gCGCUG------------CGGGCCuCCGCUa----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 105534 0.67 0.778624
Target:  5'- -cCGGCGCCCGGGGGUcgaaGAUcAGGUacaGCc -3'
miRNA:   3'- gcGCUGCGGGCCUCCG----CUA-UCCA---CGc -5'
8954 3' -60.6 NC_002512.2 + 107717 0.67 0.769882
Target:  5'- uCGUGGCGCa-GGucGCagaGGUGGGUGCGg -3'
miRNA:   3'- -GCGCUGCGggCCucCG---CUAUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 116732 0.67 0.769882
Target:  5'- cCGaCGugGCCCGGcugauGGCGAUGGaccagGCc -3'
miRNA:   3'- -GC-GCugCGGGCCu----CCGCUAUCca---CGc -5'
8954 3' -60.6 NC_002512.2 + 133391 0.67 0.761034
Target:  5'- gGCGGuCGCCCGGAccauggagGGCGAgacGGccGCGc -3'
miRNA:   3'- gCGCU-GCGGGCCU--------CCGCUau-CCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 53849 0.67 0.761034
Target:  5'- gGCGGCGCCgGGAGGaGAgGGGgacCGu -3'
miRNA:   3'- gCGCUGCGGgCCUCCgCUaUCCac-GC- -5'
8954 3' -60.6 NC_002512.2 + 107159 0.67 0.761034
Target:  5'- gCGCGuuucCGCCCGGgaGGGCGuugaugccGUGCGg -3'
miRNA:   3'- -GCGCu---GCGGGCC--UCCGCuauc----CACGC- -5'
8954 3' -60.6 NC_002512.2 + 38041 0.67 0.761034
Target:  5'- gGgGACGCCgGaGGGGUGggAGG-GCGc -3'
miRNA:   3'- gCgCUGCGGgC-CUCCGCuaUCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.