miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 146869 0.69 0.677804
Target:  5'- gCGCGGggccacuacCGCCCGGAGGCcc-AGGcGCa -3'
miRNA:   3'- -GCGCU---------GCGGGCCUCCGcuaUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 125017 0.69 0.687281
Target:  5'- aGgGACGCCCGcGGGGCcg-AGGUcGCc -3'
miRNA:   3'- gCgCUGCGGGC-CUCCGcuaUCCA-CGc -5'
8954 3' -60.6 NC_002512.2 + 153441 0.68 0.693891
Target:  5'- aGCGGCcguuccgagaccugGCCCGGAGGU--UGGGUcuGCGu -3'
miRNA:   3'- gCGCUG--------------CGGGCCUCCGcuAUCCA--CGC- -5'
8954 3' -60.6 NC_002512.2 + 196389 0.68 0.696718
Target:  5'- uCGgGACGCCgCGGGucuGGCGcgGGGacGCGg -3'
miRNA:   3'- -GCgCUGCGG-GCCU---CCGCuaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 79480 0.68 0.696718
Target:  5'- cCGCG-CGCCCGuGGGCGGUucGGGgagGgGg -3'
miRNA:   3'- -GCGCuGCGGGCcUCCGCUA--UCCa--CgC- -5'
8954 3' -60.6 NC_002512.2 + 95014 0.68 0.705171
Target:  5'- uCGCGuCGUCCGGggcagggGGGCGGUcAGGcugUGCGu -3'
miRNA:   3'- -GCGCuGCGGGCC-------UCCGCUA-UCC---ACGC- -5'
8954 3' -60.6 NC_002512.2 + 117700 0.68 0.705171
Target:  5'- gCGUGGCGCaCCuGcGGCGGgugcgcagcgacaUGGGUGCGa -3'
miRNA:   3'- -GCGCUGCG-GGcCuCCGCU-------------AUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 217501 0.68 0.706108
Target:  5'- cCGcCGcCGCCCGaAGGCGAgcucgggGGGUcGCGg -3'
miRNA:   3'- -GC-GCuGCGGGCcUCCGCUa------UCCA-CGC- -5'
8954 3' -60.6 NC_002512.2 + 222652 0.68 0.706108
Target:  5'- cCGCGACGgCCGGccGGGCcg-AGGgGCGc -3'
miRNA:   3'- -GCGCUGCgGGCC--UCCGcuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 130592 0.68 0.715442
Target:  5'- cCGCGGC-CUCGGAGGCGG-AGGaGaCGa -3'
miRNA:   3'- -GCGCUGcGGGCCUCCGCUaUCCaC-GC- -5'
8954 3' -60.6 NC_002512.2 + 170793 0.68 0.715442
Target:  5'- gCGCGACGa-CGGcGGCGAgGGGaGCGa -3'
miRNA:   3'- -GCGCUGCggGCCuCCGCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 11680 0.68 0.715442
Target:  5'- cCGCGGCccgaggcggggGCCCGaGGGGCGAggcAGGagccgGCGu -3'
miRNA:   3'- -GCGCUG-----------CGGGC-CUCCGCUa--UCCa----CGC- -5'
8954 3' -60.6 NC_002512.2 + 220214 0.68 0.715442
Target:  5'- cCGaCGGCgGCCCGGGGGaCGA---GUGCGc -3'
miRNA:   3'- -GC-GCUG-CGGGCCUCC-GCUaucCACGC- -5'
8954 3' -60.6 NC_002512.2 + 13687 0.68 0.715442
Target:  5'- gGCGACgGCCgCGGcGGUGAUcacGGGcGCGa -3'
miRNA:   3'- gCGCUG-CGG-GCCuCCGCUA---UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 198011 0.68 0.715442
Target:  5'- gGCGACGgaCGGGGGCGA-GGGacGCGc -3'
miRNA:   3'- gCGCUGCggGCCUCCGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 162013 0.68 0.724715
Target:  5'- uGCGGacCGCCUGGccgacGGCGAgguGGUGCc -3'
miRNA:   3'- gCGCU--GCGGGCCu----CCGCUau-CCACGc -5'
8954 3' -60.6 NC_002512.2 + 118196 0.68 0.724715
Target:  5'- cCGCGAC-CCC-GAGGCcgucuGGUGCGa -3'
miRNA:   3'- -GCGCUGcGGGcCUCCGcuau-CCACGC- -5'
8954 3' -60.6 NC_002512.2 + 154386 0.68 0.724715
Target:  5'- gGCGAaaguccCGCCCccgucGGAGGCGAUcgGGGUcCGa -3'
miRNA:   3'- gCGCU------GCGGG-----CCUCCGCUA--UCCAcGC- -5'
8954 3' -60.6 NC_002512.2 + 219780 0.68 0.733918
Target:  5'- cCGCGGCcgGCCCGGccgGGGacacaGAUAGGggacGCGc -3'
miRNA:   3'- -GCGCUG--CGGGCC---UCCg----CUAUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 125150 0.68 0.733918
Target:  5'- cCGCGGgGgcCCCGGGGGCGGgcGGacgGUGa -3'
miRNA:   3'- -GCGCUgC--GGGCCUCCGCUauCCa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.