miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 137093 0.71 0.53542
Target:  5'- cCGCGguguGCGCCCaGGcGCGcgGGGUGCGa -3'
miRNA:   3'- -GCGC----UGCGGGcCUcCGCuaUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 157141 0.71 0.572886
Target:  5'- gGCGGCggGCCCGGggcGGGCGGcGGGccggGCGg -3'
miRNA:   3'- gCGCUG--CGGGCC---UCCGCUaUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 130152 0.71 0.572886
Target:  5'- cCGCGGgGCCCGGcGGCGGgccGGcccGCGa -3'
miRNA:   3'- -GCGCUgCGGGCCuCCGCUau-CCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 228414 0.71 0.572886
Target:  5'- aCGgGGCGCUgGGGGGCG--GGG-GCGg -3'
miRNA:   3'- -GCgCUGCGGgCCUCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 152460 0.7 0.59186
Target:  5'- gCGCGGCGUUgGGAGGCGucccGGGUccugugacGCGa -3'
miRNA:   3'- -GCGCUGCGGgCCUCCGCua--UCCA--------CGC- -5'
8954 3' -60.6 NC_002512.2 + 114054 0.7 0.601388
Target:  5'- gGCGG-GCCCGGAacaGCGGUAGGcGCa -3'
miRNA:   3'- gCGCUgCGGGCCUc--CGCUAUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 213001 0.7 0.601388
Target:  5'- cCGCGGCcgucggGCCCGG-GGCccucucgAGGUGCGu -3'
miRNA:   3'- -GCGCUG------CGGGCCuCCGcua----UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 219706 0.7 0.620498
Target:  5'- gCGuCGGCGCUCGGGGcGCGAgAGGcgGCc -3'
miRNA:   3'- -GC-GCUGCGGGCCUC-CGCUaUCCa-CGc -5'
8954 3' -60.6 NC_002512.2 + 156461 0.7 0.620498
Target:  5'- gGCGGCGggggaCUCGGGGGCGGcGGGcucgGCGg -3'
miRNA:   3'- gCGCUGC-----GGGCCUCCGCUaUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 97378 0.7 0.620498
Target:  5'- cCGCGGCGgCCGGAGaCGGgggcGGGcGCGa -3'
miRNA:   3'- -GCGCUGCgGGCCUCcGCUa---UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 90121 0.7 0.620498
Target:  5'- uCGCgGGCGCCCGGuGcGCGA-GGGccGCGg -3'
miRNA:   3'- -GCG-CUGCGGGCCuC-CGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 140926 0.7 0.630068
Target:  5'- aCGCGGCgGCUCGGgacggcgacgAGGCGGaAGGgggGCGg -3'
miRNA:   3'- -GCGCUG-CGGGCC----------UCCGCUaUCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 204715 0.69 0.637725
Target:  5'- gGCGACggcggGCCCGG-GGCGGggggccggacccGGGUGCu -3'
miRNA:   3'- gCGCUG-----CGGGCCuCCGCUa-----------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 107107 0.69 0.639639
Target:  5'- -cCGGCGCCCucGGGGGagacgaccCGAUAGGUGaCGg -3'
miRNA:   3'- gcGCUGCGGG--CCUCC--------GCUAUCCAC-GC- -5'
8954 3' -60.6 NC_002512.2 + 167602 0.69 0.643466
Target:  5'- uGCGACGCCCGGGacgaccucuuccuCGAUcGGGUGCc -3'
miRNA:   3'- gCGCUGCGGGCCUcc-----------GCUA-UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 95834 0.69 0.649205
Target:  5'- gGCGACgGCCCgcaGGAGGCcg-GGG-GCGg -3'
miRNA:   3'- gCGCUG-CGGG---CCUCCGcuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 122040 0.69 0.649205
Target:  5'- uCGCGcACGCCCGG-GGCGGcgucgGCGg -3'
miRNA:   3'- -GCGC-UGCGGGCCuCCGCUauccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 46039 0.69 0.675904
Target:  5'- cCGgGACGCCCGGAaucgguagcgcagGGCGucgagcagcguguGUGGGUGa- -3'
miRNA:   3'- -GCgCUGCGGGCCU-------------CCGC-------------UAUCCACgc -5'
8954 3' -60.6 NC_002512.2 + 172 0.69 0.677804
Target:  5'- gCGCG-CGCCgGGAGG-GAcGGGgGCGa -3'
miRNA:   3'- -GCGCuGCGGgCCUCCgCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 229575 0.69 0.677804
Target:  5'- gCGCG-CGCCgGGAGG-GAcGGGgGCGa -3'
miRNA:   3'- -GCGCuGCGGgCCUCCgCUaUCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.