miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 53849 0.67 0.761034
Target:  5'- gGCGGCGCCgGGAGGaGAgGGGgacCGu -3'
miRNA:   3'- gCGCUGCGGgCCUCCgCUaUCCac-GC- -5'
8954 3' -60.6 NC_002512.2 + 74639 0.71 0.526182
Target:  5'- gCGCGACgGCCCGGGGGaGAUcGGGggaGCu -3'
miRNA:   3'- -GCGCUG-CGGGCCUCCgCUA-UCCa--CGc -5'
8954 3' -60.6 NC_002512.2 + 74916 0.72 0.517005
Target:  5'- aCGCGGagGCCCGGAGGCGGaucgcGGaccGCGg -3'
miRNA:   3'- -GCGCUg-CGGGCCUCCGCUau---CCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 79480 0.68 0.696718
Target:  5'- cCGCG-CGCCCGuGGGCGGUucGGGgagGgGg -3'
miRNA:   3'- -GCGCuGCGGGCcUCCGCUA--UCCa--CgC- -5'
8954 3' -60.6 NC_002512.2 + 80699 0.76 0.302665
Target:  5'- aGCGGCGUCCgGGGGGCGA-GGGcGCGc -3'
miRNA:   3'- gCGCUGCGGG-CCUCCGCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 80862 0.66 0.851289
Target:  5'- aCGCGGgGCUCGGugucGGGCGGUccGcgGCGg -3'
miRNA:   3'- -GCGCUgCGGGCC----UCCGCUAucCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 80925 0.75 0.329699
Target:  5'- gCGCgGGCGCCCucccGGCGGUAGGUGCc -3'
miRNA:   3'- -GCG-CUGCGGGccu-CCGCUAUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 81873 0.66 0.84383
Target:  5'- aGCGACagagGCCCagGGAGGCcGU-GGUGUa -3'
miRNA:   3'- gCGCUG----CGGG--CCUCCGcUAuCCACGc -5'
8954 3' -60.6 NC_002512.2 + 81993 0.66 0.851289
Target:  5'- gGgGGCGUCuCGGGGGCGGUcgcgGCGa -3'
miRNA:   3'- gCgCUGCGG-GCCUCCGCUAuccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 84277 0.66 0.836202
Target:  5'- aGCGGgccgaacgccCGCCUGGAGGUguucaucaGGUAGuUGCGg -3'
miRNA:   3'- gCGCU----------GCGGGCCUCCG--------CUAUCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 90121 0.7 0.620498
Target:  5'- uCGCgGGCGCCCGGuGcGCGA-GGGccGCGg -3'
miRNA:   3'- -GCG-CUGCGGGCCuC-CGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 91919 0.67 0.795755
Target:  5'- gGCGGCGCgCCGucGGCGGccgacuuggucuUGGGcGCGa -3'
miRNA:   3'- gCGCUGCG-GGCcuCCGCU------------AUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 94738 0.68 0.743044
Target:  5'- gGCGAacccCGCCCGGucgcAGGCGuc-GGUGaCGa -3'
miRNA:   3'- gCGCU----GCGGGCC----UCCGCuauCCAC-GC- -5'
8954 3' -60.6 NC_002512.2 + 95014 0.68 0.705171
Target:  5'- uCGCGuCGUCCGGggcagggGGGCGGUcAGGcugUGCGu -3'
miRNA:   3'- -GCGCuGCGGGCC-------UCCGCUA-UCC---ACGC- -5'
8954 3' -60.6 NC_002512.2 + 95834 0.69 0.649205
Target:  5'- gGCGACgGCCCgcaGGAGGCcg-GGG-GCGg -3'
miRNA:   3'- gCGCUG-CGGG---CCUCCGcuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 97378 0.7 0.620498
Target:  5'- cCGCGGCGgCCGGAGaCGGgggcGGGcGCGa -3'
miRNA:   3'- -GCGCUGCgGGCCUCcGCUa---UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 100653 0.66 0.851289
Target:  5'- aCGCGggaugguacAgGUCCGuGAGGUaGUAGGUGCu -3'
miRNA:   3'- -GCGC---------UgCGGGC-CUCCGcUAUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 101044 0.66 0.84383
Target:  5'- gCGCGGCGCCCGa--GCGGUgcAGcUGCGc -3'
miRNA:   3'- -GCGCUGCGGGCcucCGCUA--UCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 103065 0.67 0.748479
Target:  5'- gCGCGACGacgggacggacuaCgGGAGGCGAUcccGGGgacggGCGc -3'
miRNA:   3'- -GCGCUGCg------------GgCCUCCGCUA---UCCa----CGC- -5'
8954 3' -60.6 NC_002512.2 + 103325 0.66 0.836202
Target:  5'- gGcCGAgGCCCGGGcGGCGuagcccGGG-GCGg -3'
miRNA:   3'- gC-GCUgCGGGCCU-CCGCua----UCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.