miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 103489 0.66 0.851289
Target:  5'- uCGaCGGCGCCCGG-GGCcccGGGcGCu -3'
miRNA:   3'- -GC-GCUGCGGGCCuCCGcuaUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 104281 0.66 0.828412
Target:  5'- gGCGucuuucucGCGUCCGGcGGCGggAGGcUGCc -3'
miRNA:   3'- gCGC--------UGCGGGCCuCCGCuaUCC-ACGc -5'
8954 3' -60.6 NC_002512.2 + 105534 0.67 0.778624
Target:  5'- -cCGGCGCCCGGGGGUcgaaGAUcAGGUacaGCc -3'
miRNA:   3'- gcGCUGCGGGCCUCCG----CUA-UCCA---CGc -5'
8954 3' -60.6 NC_002512.2 + 106183 0.66 0.820465
Target:  5'- gGCGACGCCgGGuccuucggguuGGCGAUcauccGGUccGCGg -3'
miRNA:   3'- gCGCUGCGGgCCu----------CCGCUAu----CCA--CGC- -5'
8954 3' -60.6 NC_002512.2 + 107107 0.69 0.639639
Target:  5'- -cCGGCGCCCucGGGGGagacgaccCGAUAGGUGaCGg -3'
miRNA:   3'- gcGCUGCGGG--CCUCC--------GCUAUCCAC-GC- -5'
8954 3' -60.6 NC_002512.2 + 107159 0.67 0.761034
Target:  5'- gCGCGuuucCGCCCGGgaGGGCGuugaugccGUGCGg -3'
miRNA:   3'- -GCGCu---GCGGGCC--UCCGCuauc----CACGC- -5'
8954 3' -60.6 NC_002512.2 + 107717 0.67 0.769882
Target:  5'- uCGUGGCGCa-GGucGCagaGGUGGGUGCGg -3'
miRNA:   3'- -GCGCUGCGggCCucCG---CUAUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 108323 0.74 0.396842
Target:  5'- gGCGGCGCgCGGcGGGCGGUcGGcGCGg -3'
miRNA:   3'- gCGCUGCGgGCC-UCCGCUAuCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 108394 0.66 0.833105
Target:  5'- gGCGA-GCCCGGuGGGUGggGGGgaggacggggacgGCGg -3'
miRNA:   3'- gCGCUgCGGGCC-UCCGCuaUCCa------------CGC- -5'
8954 3' -60.6 NC_002512.2 + 108807 0.66 0.820465
Target:  5'- uGCgGGCGCuguuCCGcGAGGCGugcgAGGUGUa -3'
miRNA:   3'- gCG-CUGCG----GGC-CUCCGCua--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 113656 0.67 0.761034
Target:  5'- gGCG-CGgCCGGccGCGA-GGGUGCGc -3'
miRNA:   3'- gCGCuGCgGGCCucCGCUaUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 114054 0.7 0.601388
Target:  5'- gGCGG-GCCCGGAacaGCGGUAGGcGCa -3'
miRNA:   3'- gCGCUgCGGGCCUc--CGCUAUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 115574 0.66 0.836202
Target:  5'- aGCGugGCgCUGGAGcaccuGCGccGGGUGUa -3'
miRNA:   3'- gCGCugCG-GGCCUC-----CGCuaUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 116198 0.66 0.81237
Target:  5'- uGCGG-GCCaGGcAGGCGGUcgagcugacgaAGGUGCGc -3'
miRNA:   3'- gCGCUgCGGgCC-UCCGCUA-----------UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 116725 0.66 0.820465
Target:  5'- uCGCGuccCGCCCGGccGCGGcgAGGccgGCGc -3'
miRNA:   3'- -GCGCu--GCGGGCCucCGCUa-UCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 116732 0.67 0.769882
Target:  5'- cCGaCGugGCCCGGcugauGGCGAUGGaccagGCc -3'
miRNA:   3'- -GC-GCugCGGGCCu----CCGCUAUCca---CGc -5'
8954 3' -60.6 NC_002512.2 + 117700 0.68 0.705171
Target:  5'- gCGUGGCGCaCCuGcGGCGGgugcgcagcgacaUGGGUGCGa -3'
miRNA:   3'- -GCGCUGCG-GGcCuCCGCU-------------AUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 118196 0.68 0.724715
Target:  5'- cCGCGAC-CCC-GAGGCcgucuGGUGCGa -3'
miRNA:   3'- -GCGCUGcGGGcCUCCGcuau-CCACGC- -5'
8954 3' -60.6 NC_002512.2 + 118958 0.68 0.743044
Target:  5'- aGCGugGggCGGcGGCGggAGGUGCu -3'
miRNA:   3'- gCGCugCggGCCuCCGCuaUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 120609 0.66 0.820465
Target:  5'- aGCgGGCGCCgGuGAGaGCGggAGGcgGCGg -3'
miRNA:   3'- gCG-CUGCGGgC-CUC-CGCuaUCCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.