Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8954 | 3' | -60.6 | NC_002512.2 | + | 121903 | 0.73 | 0.421097 |
Target: 5'- gGCGACGCgCGGGGaGCGAgcGGgacgagGCGg -3' miRNA: 3'- gCGCUGCGgGCCUC-CGCUauCCa-----CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 139267 | 0.74 | 0.4121 |
Target: 5'- uCGCGcCGCCCGGcgcgcggGGGCGAaGGGggGCGc -3' miRNA: 3'- -GCGCuGCGGGCC-------UCCGCUaUCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 108323 | 0.74 | 0.396842 |
Target: 5'- gGCGGCGCgCGGcGGGCGGUcGGcGCGg -3' miRNA: 3'- gCGCUGCGgGCC-UCCGCUAuCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 80925 | 0.75 | 0.329699 |
Target: 5'- gCGCgGGCGCCCucccGGCGGUAGGUGCc -3' miRNA: 3'- -GCG-CUGCGGGccu-CCGCUAUCCACGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 80699 | 0.76 | 0.302665 |
Target: 5'- aGCGGCGUCCgGGGGGCGA-GGGcGCGc -3' miRNA: 3'- gCGCUGCGGG-CCUCCGCUaUCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 74639 | 0.71 | 0.526182 |
Target: 5'- gCGCGACgGCCCGGGGGaGAUcGGGggaGCu -3' miRNA: 3'- -GCGCUG-CGGGCCUCCgCUA-UCCa--CGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 137093 | 0.71 | 0.53542 |
Target: 5'- cCGCGguguGCGCCCaGGcGCGcgGGGUGCGa -3' miRNA: 3'- -GCGC----UGCGGGcCUcCGCuaUCCACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 11680 | 0.68 | 0.715442 |
Target: 5'- cCGCGGCccgaggcggggGCCCGaGGGGCGAggcAGGagccgGCGu -3' miRNA: 3'- -GCGCUG-----------CGGGC-CUCCGCUa--UCCa----CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 13687 | 0.68 | 0.715442 |
Target: 5'- gGCGACgGCCgCGGcGGUGAUcacGGGcGCGa -3' miRNA: 3'- gCGCUG-CGG-GCCuCCGCUA---UCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 95014 | 0.68 | 0.705171 |
Target: 5'- uCGCGuCGUCCGGggcagggGGGCGGUcAGGcugUGCGu -3' miRNA: 3'- -GCGCuGCGGGCC-------UCCGCUA-UCC---ACGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 79480 | 0.68 | 0.696718 |
Target: 5'- cCGCG-CGCCCGuGGGCGGUucGGGgagGgGg -3' miRNA: 3'- -GCGCuGCGGGCcUCCGCUA--UCCa--CgC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 153441 | 0.68 | 0.693891 |
Target: 5'- aGCGGCcguuccgagaccugGCCCGGAGGU--UGGGUcuGCGu -3' miRNA: 3'- gCGCUG--------------CGGGCCUCCGcuAUCCA--CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 125017 | 0.69 | 0.687281 |
Target: 5'- aGgGACGCCCGcGGGGCcg-AGGUcGCc -3' miRNA: 3'- gCgCUGCGGGC-CUCCGcuaUCCA-CGc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 46039 | 0.69 | 0.675904 |
Target: 5'- cCGgGACGCCCGGAaucgguagcgcagGGCGucgagcagcguguGUGGGUGa- -3' miRNA: 3'- -GCgCUGCGGGCCU-------------CCGC-------------UAUCCACgc -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 122040 | 0.69 | 0.649205 |
Target: 5'- uCGCGcACGCCCGG-GGCGGcgucgGCGg -3' miRNA: 3'- -GCGC-UGCGGGCCuCCGCUauccaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 140926 | 0.7 | 0.630068 |
Target: 5'- aCGCGGCgGCUCGGgacggcgacgAGGCGGaAGGgggGCGg -3' miRNA: 3'- -GCGCUG-CGGGCC----------UCCGCUaUCCa--CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 97378 | 0.7 | 0.620498 |
Target: 5'- cCGCGGCGgCCGGAGaCGGgggcGGGcGCGa -3' miRNA: 3'- -GCGCUGCgGGCCUCcGCUa---UCCaCGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 90121 | 0.7 | 0.620498 |
Target: 5'- uCGCgGGCGCCCGGuGcGCGA-GGGccGCGg -3' miRNA: 3'- -GCG-CUGCGGGCCuC-CGCUaUCCa-CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 152460 | 0.7 | 0.59186 |
Target: 5'- gCGCGGCGUUgGGAGGCGucccGGGUccugugacGCGa -3' miRNA: 3'- -GCGCUGCGGgCCUCCGCua--UCCA--------CGC- -5' |
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8954 | 3' | -60.6 | NC_002512.2 | + | 130152 | 0.71 | 0.572886 |
Target: 5'- cCGCGGgGCCCGGcGGCGGgccGGcccGCGa -3' miRNA: 3'- -GCGCUgCGGGCCuCCGCUau-CCa--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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